Browse Element(s) Details


Os.53294.1.S1_at

Description gb:AK071842.1
DB_XREF= gi:32981865
TID=Os.53294.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023119D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023119D23, full insert sequence.
FL= gb:AK071842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2655011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26530NANA4+15450123..15451384retrotransposon protein, putative, LINE subclass
LOC_Os04g26540Os.40360.1.S1_x_at1/114+15454983..15456221hypothetical protein
LOC_Os04g26550Os.53294.1.S1_at11/114+15474803..15475853expressed protein
LOC_Os04g26560OsAffx.29396.5.S1_x_at11/114+15479263..15482418hypothetical protein
LOC_Os04g26560OsAffx.29396.5.S1_at11/114+15479263..15482418hypothetical protein
LOC_Os04g26560OsAffx.29396.1.S1_x_at2/114+15479263..15482418hypothetical protein
LOC_Os04g26570NANA4+15484027..15486983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26580OsAffx.3903.1.S1_at11/114+15487281..15490115hypothetical protein
LOC_Os04g26580OsAffx.19614.1.A1_at1/114+15487281..15490115hypothetical protein
LOC_Os04g26590Os.33648.1.S1_at1/114+15490452..15491508hypothetical protein
LOC_Os04g26600OsAffx.26166.1.S1_at11/114+15495624..15496060hypothetical protein
LOC_Os04g26610OsAffx.26167.1.S1_at11/114+15498139..15498531hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53294.1.S1_at--589--2391Chr04:15475365..15475389 (25 bp)
AAACTACAAGAGCAGCGTCCCGGCA
LOC_Os04g26550
Os.53294.1.S1_at--412--3651Chr04:15475268..15475292 (25 bp)
CTTCTCTTCGAGAACCGCGAGGTTG
LOC_Os04g26550
Os.53294.1.S1_at--416--10711Chr04:15475202..15475226 (25 bp)
TTGCTGCTGAAGAACTGCACTACCC
LOC_Os04g26550
Os.53294.1.S1_at--1153--7171Chr04:15475100..15475124 (25 bp)
GTCGGCAACATACAGCCCTCGTGGG
LOC_Os04g26550
Os.53294.1.S1_at--342--351Chr04:15475054..15475078 (25 bp)
ATAACTGATCGACGCGACACCGGTA
LOC_Os04g26550
Os.53294.1.S1_at--30--8351Chr04:15475009..15475033 (25 bp)
GGCTGGTGACAAATAATCTCTCTCT
LOC_Os04g26550
Os.53294.1.S1_at--680--1131Chr04:15474913..15474937 (25 bp)
AGTGCTGTGCTACAAACTCTACATA
LOC_Os04g26550
Os.53294.1.S1_at--990--2611Chr04:15474867..15474891 (25 bp)
AACCCCTCATCATTCCGTATATATG
LOC_Os04g26550
Os.53294.1.S1_at--908--1851Chr04:15474827..15474851 (25 bp)
ACGACGATCGACTCTTGTGGTTCAA
LOC_Os04g26550
Os.53294.1.S1_at--210--3611Chr04:15474814..15474838 (25 bp)
CTTGTGGTTCAATTCGATCGTCTCA
LOC_Os04g26550
Os.53294.1.S1_at--1037--3151Chr04:15474804..15474828 (25 bp)
AATTCGATCGTCTCAGTGCCTTAAC
LOC_Os04g26550
Target Sequence 
AAACTACAAGAGCAGCGTCCCGGCATGGGACGGCAACTGGCCGGAGGCTTCCTCCTGCCGGGTCGACGACGCCAGCGGCG
CAGACGGCCAGTGCCGTCTTCTCTTCGAGAACCGCGAGGTTGCTCTGCTCACTGCCACCGGCGGCCGCCGCGTTCTCGGG
GGCTTGCTGCTGAAGAACTGCACTACCCCAACCCCATGGTACGCGTGGCTGTTCCCCTGGACCGATCCCTGCACCACGTA
CCTCGACAACACCACCCGCCCGTACGTCGGCAACATACAGCCCTCGTGGGCGGCAGCCGTCTTCAACATGGATAACTGAT
CGACGCGACACCGGTACCTCCCACCCACTTCGCGCAGGCTGGTGACAAATAATCTCTCTCTCTCTCCCTCTCTCTCTCTC
TCTCTCTCTCTGGTTATATATATATATATATCATCATGGACATGGAATGATGAGTGCTGTGCTACAAACTCTACATACAT
ATAGCTGCTCATCATCTCAACCCCTCATCATTCCGTATATATGTGTGTAATGAATAAAACGACGATCGACTCTTGTGGTT
CAATTCGATCGTCTCAGTGCCTTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis