Browse Element(s) Details


Os.53356.1.S1_at

Description gb:AK072250.1
DB_XREF= gi:32982273
TID=Os.53356.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004F04, full insert sequence.
FL= gb:AK072250.1 gb:AK100121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2451011/11galactinol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24460Os.26468.1.S2_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed
LOC_Os03g24460Os.26468.1.S1_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed
LOC_Os03g24470OsAffx.13003.1.S1_at11/113+13929299..13929569hypothetical protein
LOC_Os03g24480OsAffx.25206.1.S1_at11/113+13932055..13933802hypothetical protein
LOC_Os03g24490Os.47463.1.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24490Os.14491.2.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24500OsAffx.3308.1.S1_at11/113+13945187..13946610hypothetical protein
LOC_Os03g24510Os.53356.1.S1_at11/113+13948943..13950640galactinol synthase, putative, expressed
LOC_Os03g24520Os.17928.1.S1_at11/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.56130.1.S1_at9/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.35897.2.S1_x_at1/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24530OsAffx.25207.1.S1_at11/113+13961100..13961423hypothetical protein
LOC_Os03g24540OsAffx.13004.1.S1_at9/113+13965574..13968922expressed protein
LOC_Os03g24550NANA3+13971172..13972613hypothetical protein
LOC_Os03g24560Os.56938.1.S1_at11/113+13974644..13975479expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53356.1.S1_at--460--4431Chr03:13950270..13950294 (25 bp)
GCCATGCACAAGCTAAACTGATCAA
LOC_Os03g24510
Os.53356.1.S1_at--422--2391Chr03:13950284..13950308 (25 bp)
AAACTGATCAATCTCCTACTTTGTT
LOC_Os03g24510
Os.53356.1.S1_at--711--9251Chr03:13950297..13950321 (25 bp)
TCCTACTTTGTTCTTGCAGAAGCTT
LOC_Os03g24510
Os.53356.1.S1_at--541--811Chr03:13950425..13950449 (25 bp)
ATGGGTGCTATGATCTGTGCTGCTA
LOC_Os03g24510
Os.53356.1.S1_at--863--7751Chr03:13950465..13950489 (25 bp)
GGTCTCGATTGGGAAATTAAGCAAA
LOC_Os03g24510
Os.53356.1.S1_at--944--4051Chr03:13950493..13950517 (25 bp)
CGATGAGGATATGAACGTGCGAATT
LOC_Os03g24510
Os.53356.1.S1_at--964--5451Chr03:13950505..13950529 (25 bp)
GAACGTGCGAATTGCTTCATGATCT
LOC_Os03g24510
Os.53356.1.S1_at--454--4591Chr03:13950511..13950535 (25 bp)
GCGAATTGCTTCATGATCTCTTTGG
LOC_Os03g24510
Os.53356.1.S1_at--921--451Chr03:13950526..13950550 (25 bp)
ATCTCTTTGGTTTATCTTGTATAGG
LOC_Os03g24510
Os.53356.1.S1_at--583--7611Chr03:13950607..13950631 (25 bp)
GGGAAGGAACCGACTTACTCTGACA
LOC_Os03g24510
Os.53356.1.S1_at--1131--8171Chr03:13950612..13950636 (25 bp)
GGAACCGACTTACTCTGACAAATGT
LOC_Os03g24510
Target Sequence 
GCCATGCACAAGCTAAACTGATCAATCTCCTACTTTGTTCTTGCAGAAGCTTAAAAGATTTTTTTTAAAAAAAAAGAAAG
AAGTTGGCAAGAACATGATGAAGAAATTGATTTTTCTTCAAAGGAAAAGGAGAAGAAATTAATGTGCNATCAGCAATGGG
TGCTATGATCTGTGCTGCTAGCTGCTGTTTTGGGGGGTCTCGATTGGGAAATTAAGCAAAAATCGATGAGGATATGAACG
TGCGAATTGCTTCATGATCTCTTTGGTTTATCTTGTATAGGACACAATGTTGTAATTAATTTTGTGAGGATTAGTGTGAA
TACTGGGAGCTAGGTGGGGGAAGGAACCGACTTACTCTGACAAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis