Browse Element(s) Details


Os.53362.1.S1_at

Description gb:AK100933.1
DB_XREF= gi:32986142
TID=Os.53362.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136C05, full insert sequence.
FL= gb:AK100933.1 gb:AK072263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3960011/11Sodium/hydrogen exchanger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39570Os.47463.1.S1_x_at6/115+23141988..23145685transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39570Os.14491.2.S1_x_at4/115+23141988..23145685transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39580NANA5+23156756..23157406Streptomyces cyclase/dehydrase family protein
LOC_Os05g39590Os.54212.1.S1_at11/115+23164500..23166848AP2 domain containing protein, expressed
LOC_Os05g39600Os.53362.1.S1_at11/115+23167929..23171197Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g39600Os.53362.2.S1_at6/115+23167929..23171197Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g39610Os.10500.1.S1_at11/115+23171743..23174288Exo70 exocyst complex subunit family protein, expressed
LOC_Os05g39620OsAffx.21171.3.S1_x_at4/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_x_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.4.S1_x_at2/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.22711.4.S1_at1/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39630OsAffx.29284.1.S1_x_at1/115+23187528..23188130hypothetical protein
LOC_Os05g39640OsAffx.15029.1.S1_at11/115+23189008..23189486hypothetical protein
LOC_Os05g39650Os.27499.2.S1_a_at11/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_s_at4/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_x_at1/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53362.1.S1_at--440--1871Chr05:23170664..23170688 (25 bp)
ACGAGGCGGGCTACGACCTTGTGCT
LOC_Os05g39600
Os.53362.1.S1_at--1006--9431Chr05:23170813..23170837 (25 bp)
TCGGTGCTCATCATGAAGCAGCAGG
LOC_Os05g39600
Os.53362.1.S1_at--437--2751Chr05:23170926..23170950 (25 bp)
AAGAAACATGTCAACCGCCGGATCT
LOC_Os05g39600
Os.53362.1.S1_at--908--2611Chr05:23170938..23170962 (25 bp)
AACCGCCGGATCTTAGCAGGTTCAG
LOC_Os05g39600
Os.53362.1.S1_at--967--1011Chr05:23170955..23170979 (25 bp)
AGGTTCAGGCAGTAGGCGATTGTTC
LOC_Os05g39600
Os.53362.1.S1_at--849--4631Chr05:23170970..23170994 (25 bp)
GCGATTGTTCTGTTCTAGCCTCTAG
LOC_Os05g39600
Os.53362.1.S1_at--611--9991Chr05:23170985..23171009 (25 bp)
TAGCCTCTAGGACCTGGTTCAATGT
LOC_Os05g39600
Os.53362.1.S1_at--76--8111Chr05:23170994..23171018 (25 bp)
GGACCTGGTTCAATGTAGACTTTCA
LOC_Os05g39600
Os.53362.1.S1_at--246--6411Chr05:23171008..23171032 (25 bp)
GTAGACTTTCAGATTCCCTTTTTGC
LOC_Os05g39600
Os.53362.1.S1_at--998--10631Chr05:23171021..23171045 (25 bp)
TTCCCTTTTTGCGTCCAAGTATGTT
LOC_Os05g39600
Os.53362.1.S1_at--704--5531Chr05:23171113..23171137 (25 bp)
GAAACAGCATTGTGTATAGCAGCAA
LOC_Os05g39600
Target Sequence 
ACGAGGCGGGCTACGACCTTGTGCTCGTCGGGATGCGGCACAGGTGGTACCCGGTGATGCCGGCGAACGGGATGTCGGAT
TGGAGCGAGTGCCCGGAGCTCGGCGTCATCGGCGACCTCCTCGCCTCGTCGGACTTCGACACGCCGTACTCGGTGCTCAT
CATGAAGCAGCAGGACCAGGGCGGGCTGAACGCCGCCGTGCCGGGCGCCCAGGACGTGTGGCACGTGAACGACGGCGGCG
CCGAGGACGCGCCAGCGCCGCCAAGAAACATGTCAACCGCCGGATCTTAGCAGGTTCAGGCAGTAGGCGATTGTTCTGTT
CTAGCCTCTAGGACCTGGTTCAATGTAGACTTTCAGATTCCCTTTTTGCGTCCAAGTATGTTGTGATGTATAGCTATCAG
GATTAGCATCAATCCTTAAACTGAGATGAGATCTTAAGATTATTTCAAGGAAACAGCATTGTGTATAGCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis