Browse Element(s) Details


Os.53370.1.S1_at

Description gb:AK072319.1
DB_XREF= gi:32982342
TID=Os.53370.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029D06, full insert sequence.
FL= gb:AK072319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1760010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17530Os.57138.1.S1_at11/1111+9745970..9750238pentatricopeptide, putative, expressed
LOC_Os11g17530Os.6596.1.S1_at11/1111+9745970..9750238pentatricopeptide, putative, expressed
LOC_Os11g17540Os.48441.1.S1_at11/1111+9751085..9754806Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os11g17550OsAffx.31019.1.S1_at11/1111+9755436..9756398hypothetical protein
LOC_Os11g17560OsAffx.31020.1.S1_at11/1111+9758124..9758684hypothetical protein
LOC_Os11g17570NANA11+9763048..9763401transposon protein, putative, unclassified
LOC_Os11g17580OsAffx.7134.1.S1_at11/1111+9765907..9766614hypothetical protein
LOC_Os11g17590NANA11+9768096..9768683hypothetical protein
LOC_Os11g17600Os.55735.1.S1_at11/1111+9772833..9785545expressed protein
LOC_Os11g17600Os.53370.1.S1_at10/1111+9772833..9785545expressed protein
LOC_Os11g17600Os.53046.1.S1_at1/1111+9772833..9785545expressed protein
LOC_Os11g17600OsAffx.14636.1.S1_at1/1111+9772833..9785545expressed protein
LOC_Os11g17610Os.11423.1.S1_at10/1111+9793807..9798115YjeF-related protein, C-terminus containing protein, expressed
LOC_Os11g17610OsAffx.31022.1.S1_at8/1111+9793807..9798115YjeF-related protein, C-terminus containing protein, expressed
LOC_Os11g17620NANA11+9807076..9807468hypothetical protein
LOC_Os11g17630OsAffx.24267.1.S1_at1/1111+9809392..9811764hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53370.1.S1_at--582--10651Chr11:9784465..9784489 (25 bp)
TTCCGTAAGATGTTGAAGTCCAGCT
LOC_Os11g17600
Os.53370.1.S1_at--677--7271Chr11:9784482..9784622 (25 bp)
GTCCAGCTTAAGTGGTCTTGACAAG
LOC_Os11g17600
Os.53370.1.S1_at--576--111Chr11:9784673..9784697 (25 bp)
ATTACTTCCTTCTCTATGGGATAAA
LOC_Os11g17600
Os.53370.1.S1_at--194--5631Chr11:9785090..9785114 (25 bp)
GACAAATATGCAACCTTCCTCAAAT
LOC_Os11g17600
Os.53370.1.S1_at--77--2271Chr11:9785160..9785184 (25 bp)
AAATGAAAGACACCCTAGCTTCCCT
LOC_Os11g17600
Os.53370.1.S1_at--454--10651Chr11:9785179..9785203 (25 bp)
TTCCCTGTGACAACTTTGCTCTTGG
LOC_Os11g17600
Os.53370.1.S1_at--565--8071Chr11:9785202..9785226 (25 bp)
GGAGCACATCTACAAGGTACATGTT
LOC_Os11g17600
Os.53370.1.S1_at--783--6731Chr11:9785224..9785248 (25 bp)
GTTCTTTGATTTTTGCTGTTGTGCT
LOC_Os11g17600
Os.53370.1.S1_at--357--9711Chr11:9785413..9785437 (25 bp)
TCAACTTTTTACCTGATTTCATCAG
LOC_Os11g17600
Os.53370.1.S1_at--1099--5231Chr11:9785506..9785530 (25 bp)
GAATCGGCCATGATTACCAAATGAA
LOC_Os11g17600
Os.53370.1.S1_at--1104--1671NONE
ACCAAATGAAGTGCACTGTTTTTCC
NONE
Target Sequence 
TTCCGTAAGATGTTGAAGTCCAGCTTAAGTGGTCTTGACAAGACAATCAATGCAATGTATAGAAAACTACAGAAGAATAT
TACGGCTGAAGAATTACTTCCTTCTCTATGGGATAAATGCAAGAAGGAGTTTCTTGACAAATATGCAACCTTCCTCAAAT
TGATTTCCAAAATATATCCCAGTGAAACAGTAATTTCAGTGAATGAAATGAAAGACACCCTAGCTTCCCTGTGACAACTT
TGCTCTTGGAGCACATCTACAAGGTACATGTTCTTTGATTTTTGCTGTTGTGCTTTTTACATATTAGTACCATTTGTACT
TTATTGTAGGATGTATCGCATAATTATTTTATCTTTTTGGTCAAATGTATGTTTGAAGAAAATACAATTGAATTTGGTAT
TCACTAACATTATTTTGTCTCTTTTCAAAGACAGTATATAAGGCTTCTTTAAAACATATCAACTTTTTACCTGATTTCAT
CAGAACTTAAATTGTTTGCTATGAAATACCTATATGTAAATAAGTCCTGAATTAGTGAGGACTGAACAAAAGAATCGGCC
ATGATTACCAAATGAAGTGCACTGTTTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis