Browse Element(s) Details


OsAffx.31022.1.S1_at

Description tigr:9639.m01618
TID=OsAffx.31022.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY101541 AT5g19150T24G5_50
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g176108/11YjeF-related protein, C-terminus containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17600Os.55735.1.S1_at11/1111+9772833..9785545expressed protein
LOC_Os11g17600Os.53370.1.S1_at10/1111+9772833..9785545expressed protein
LOC_Os11g17600Os.53046.1.S1_at1/1111+9772833..9785545expressed protein
LOC_Os11g17600OsAffx.14636.1.S1_at1/1111+9772833..9785545expressed protein
LOC_Os11g17610Os.11423.1.S1_at10/1111+9793807..9798115YjeF-related protein, C-terminus containing protein, expressed
LOC_Os11g17610OsAffx.31022.1.S1_at8/1111+9793807..9798115YjeF-related protein, C-terminus containing protein, expressed
LOC_Os11g17620NANA11+9807076..9807468hypothetical protein
LOC_Os11g17630OsAffx.24267.1.S1_at1/1111+9809392..9811764hypothetical protein
LOC_Os11g17640OsAffx.18904.1.S1_at10/1111+9819434..9820649hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31022.1.S1_at--557--5572Chr10:20731774..20731925 (25 bp)
GAAAGTTGTCAGTATCATCTAAATG
NONE
OsAffx.31022.1.S1_at--705--6891Chr11:9796882..9796906 (25 bp)
GTATCATCTAAATGTATCATTCCAT
LOC_Os11g17610
OsAffx.31022.1.S1_at--138--10171Chr11:9796868..9796892 (25 bp)
TATCATTCCATAAATTACGCAACAG
LOC_Os11g17610
OsAffx.31022.1.S1_at--875--6751Chr11:9796835..9796859 (25 bp)
GTTCACATGATGTTATTCAGGGTGC
LOC_Os11g17610
OsAffx.31022.1.S1_at--109--8791Chr11:9796825..9796849 (25 bp)
TGTTATTCAGGGTGCAGATCTCTCA
LOC_Os11g17610
OsAffx.31022.1.S1_at--740--6031NONE
GAGATGCTGCAACGGACTTGATATT
NONE
OsAffx.31022.1.S1_at--1023--4751NONE
GCTGCAACGGACTTGATATTTTTTA
NONE
OsAffx.31022.1.S1_at--656--6511Chr11:9795727..9795751 (25 bp)
GATATTTTTTAGTGATCTGCAGGAT
LOC_Os11g17610
OsAffx.31022.1.S1_at--759--1111Chr11:9795717..9795741 (25 bp)
AGTGATCTGCAGGATGGCCTTTTCC
LOC_Os11g17610
OsAffx.31022.1.S1_at--390--111NONE
ATTCTTTCAGGAAGCGTGAATCCGA
NONE
OsAffx.31022.1.S1_at--1081--2671Chr11:9794244..9794267 (24 bp)
AAGCGTGAATCCGATGATGCTTGGG
LOC_Os11g17610
Target Sequence 
GAAAGTTGTCAGTATCATCTAAATGTATCATTCCATAAATTACGCAACAGTACAAATAGTTCACATGATGTTATTCAGGG
TGCAGATCTCTCACATGTTTTCTGCACAAGAGATGCTGCAACGGACTTGATATTTTTTAGTGATCTGCAGGATGGCCTTT
TCCTTATAACCAATAACCTTAGTCTTGTTGAGGGTAACTTGCTTGCCATCCTAACACCAAATGTATACGAGTACAAACGT
CTTGTCCAGAAGGTTCTTAACTGTGAAGTAAATGAGGAAAACGCTTCTGAACAACTTACTGCACTATGCCAAAAAATCGG
TGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTGTAACACAAGTAAGTACCTTTGGTT
CCCCAAGGAGATGTGGTGGTCAAGGTGACATTCTTTCAGGAAGCGTGAATCCGATGATGCTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis