Browse Element(s) Details


OsAffx.18904.1.S1_at

Description tigr:9639.m01621
TID=OsAffx.18904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1764010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17610Os.11423.1.S1_at10/1111+9793807..9798115YjeF-related protein, C-terminus containing protein, expressed
LOC_Os11g17610OsAffx.31022.1.S1_at8/1111+9793807..9798115YjeF-related protein, C-terminus containing protein, expressed
LOC_Os11g17620NANA11+9807076..9807468hypothetical protein
LOC_Os11g17630OsAffx.24267.1.S1_at1/1111+9809392..9811764hypothetical protein
LOC_Os11g17640OsAffx.18904.1.S1_at10/1111+9819434..9820649hypothetical protein
LOC_Os11g17650OsAffx.7145.2.S1_at10/1111+9828453..9830009hypothetical protein
LOC_Os11g17660NANA11+9833992..9835306hypothetical protein
LOC_Os11g17670Os.17546.2.S1_x_at2/1111+9839910..9843515transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g17670OsAffx.23529.1.S1_at1/1111+9839910..9843515transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g17670OsAffx.25836.1.S1_at1/1111+9839910..9843515transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18904.1.S1_at--362--6031Chr11:9819473..9819497 (25 bp)
GAGTTGACGGATTCACTGGTGGCCC
LOC_Os11g17640
OsAffx.18904.1.S1_at--563--5751Chr11:9819478..9819502 (25 bp)
GACGGATTCACTGGTGGCCCTCATG
LOC_Os11g17640
OsAffx.18904.1.S1_at--520--8632Chr11:9819489..9819513 (25 bp)
TGGTGGCCCTCATGCCCCTAGCAGG
LOC_Os11g17640
OsAffx.18904.1.S1_at--1035--7231Chr11:9819523..9819547 (25 bp)
GTCGCCCTCGTCAGGCAAGGCATCG
LOC_Os11g17640
OsAffx.18904.1.S1_at--877--4011Chr11:9819531..9819555 (25 bp)
CGTCAGGCAAGGCATCGATCAGAGA
LOC_Os11g17640
OsAffx.18904.1.S1_at--915--491Chr11:9819575..9819599 (25 bp)
ATCGGTGAGCGCCTGAGTGGTGGAC
LOC_Os11g17640
OsAffx.18904.1.S1_at--857--1051NONE
AGGTGGGTCGGCTGCCAATAGCAAT
NONE
OsAffx.18904.1.S1_at--845--291Chr11:9820247..9820585 (25 bp)
ATAGCAATGGCCCTACCCTCCTTAA
LOC_Os11g17640
OsAffx.18904.1.S1_at--755--711Chr11:9820253..9820591 (25 bp)
ATGGCCCTACCCTCCTTAAGTGGCA
LOC_Os11g17640
OsAffx.18904.1.S1_at--675--7531Chr11:9820586..9820610 (25 bp)
GTGGCACACACGCAAAATTCTATTT
LOC_Os11g17640
OsAffx.18904.1.S1_at--688--3291Chr11:9820592..9820616 (25 bp)
CACACGCAAAATTCTATTTTCGCAT
LOC_Os11g17640
Target Sequence 
GAGTTGACGGATTCACTGGTGGCCCTCATGCCCCTAGCAGGACGCCGTCCGTCGCCCTCGTCAGGCAAGGCATCGATCAG
AGACGAAGAGGAAGGGAGGCGAATCGGTGAGCGCCTGAGTGGTGGACGGTGGAGGAGGACTGGTGGGTGGGGTAGCGGCG
GAGGTGGGTCGGCTGCCAATAGCAATGGCCCTACCCTCCTTAAGTGGCACACACGCAAAATTCTATTTTCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis