Browse Element(s) Details


OsAffx.7145.2.S1_at

Description tigr:9639.m01622
TID=OsAffx.7145.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1765010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17620NANA11+9807076..9807468hypothetical protein
LOC_Os11g17630OsAffx.24267.1.S1_at1/1111+9809392..9811764hypothetical protein
LOC_Os11g17640OsAffx.18904.1.S1_at10/1111+9819434..9820649hypothetical protein
LOC_Os11g17650OsAffx.7145.2.S1_at10/1111+9828453..9830009hypothetical protein
LOC_Os11g17660NANA11+9833992..9835306hypothetical protein
LOC_Os11g17670Os.17546.2.S1_x_at2/1111+9839910..9843515transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g17670OsAffx.23529.1.S1_at1/1111+9839910..9843515transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g17670OsAffx.25836.1.S1_at1/1111+9839910..9843515transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g17690Os.45212.1.S1_x_at6/1111+9847525..9852676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17700OsAffx.25156.5.S1_x_at4/1111+9853873..9862518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17700OsAffx.25156.2.S1_x_at3/1111+9853873..9862518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17700OsAffx.25156.1.S1_x_at2/1111+9853873..9862518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17700Os.46610.1.S1_x_at2/1111+9853873..9862518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17700OsAffx.32036.1.S1_at2/1111+9853873..9862518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17700OsAffx.25156.2.S1_at1/1111+9853873..9862518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17700OsAffx.940.1.S1_x_at1/1111+9853873..9862518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17700Os.46314.2.S1_x_at1/1111+9853873..9862518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17700OsAffx.22896.1.S1_x_at1/1111+9853873..9862518retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7145.2.S1_at--279--651Chr11:9829954..9829978 (25 bp)
ATGCAGTTGTGTACCGAGCCTCAAA
LOC_Os11g17650
OsAffx.7145.2.S1_at--811--9511Chr11:9829713..9829958 (25 bp)
TCAAATTCCAAGAGGTATACCACGA
LOC_Os11g17650
OsAffx.7145.2.S1_at--630--2731Chr11:9829653..9829677 (25 bp)
AAGCAAAGGCATGAGCCGGAGGCAA
LOC_Os11g17650
OsAffx.7145.2.S1_at--34--5491Chr11:9829609..9829633 (25 bp)
GAACATAAGCGAAAGCCGTGGTATC
LOC_Os11g17650
OsAffx.7145.2.S1_at--933--4491Chr11:9829595..9829619 (25 bp)
GCCGTGGTATCGAGCTGACAAGCTT
LOC_Os11g17650
OsAffx.7145.2.S1_at--597--8991Chr11:9829535..9829559 (25 bp)
TGAAGTCCGCGAGGCGAAAGCCCAC
LOC_Os11g17650
OsAffx.7145.2.S1_at--375--871NONE
ATGGCCTTTGCTGCCCAGGCTATCA
NONE
OsAffx.7145.2.S1_at--936--8291Chr11:9828549..9828573 (25 bp)
GGCTATCAACGCCTTGCCAATGTTC
LOC_Os11g17650
OsAffx.7145.2.S1_at--406--3191Chr11:9828532..9828556 (25 bp)
CAATGTTCGCGTACAAGCCCTCTAG
LOC_Os11g17650
OsAffx.7145.2.S1_at--377--2211Chr11:9828520..9828544 (25 bp)
ACAAGCCCTCTAGCGCGGTGGAGAA
LOC_Os11g17650
OsAffx.7145.2.S1_at--312--4711Chr11:9828484..9828508 (25 bp)
GCGGCGCCGCATTGTACACGGTGTA
LOC_Os11g17650
Target Sequence 
ATGCAGTTGTGTACCGAGCCTCAAATTCCAAGAGGTATACCACGAGAACCTTCGGCCGGGCCTACCGAAACGAAGGACAT
AAGCAAAGGCATGAGCCGGAGGCAAGCAGCGACGGTCGAAGGGAGAACATAAGCGAAAGCCGTGGTATCGAGCTGACAAG
CTTCGCCAAAGATGGACTCTGCCGGAGGGTCGTACGGTTGAAGTCCGCGAGGCGAAAGCCCACGAAGGGCATGGGTTTCG
CCAAGTATCGAACCTTGCCAGGAGAAGGCCCAGCGGGCCGACACGCCTTCCAGAGGCTTCGCCAAGGACTGGGCCGAGTC
ACTTGGCCCATTAGGAGCCCATACGAGCAAAAGACATTGTATGCCCATAAAGATATTCCTATCATAAGGGCAACCATGGC
CTTTGCTGCCCAGGCTATCAACGCCTTGCCAATGTTCGCGTACAAGCCCTCTAGCGCGGTGGAGAAGGATGGCGTTGGCG
GCGCCGCATTGTACACGGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7145.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis