Browse Element(s) Details


Os.53391.1.S1_at

Description gb:AK108855.1
DB_XREF= gi:32994064
TID=Os.53391.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-B01, full insert sequence.
FL= gb:AK072396.1 gb:AK108855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1313011/11ternary complex factor MIP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13050Os.49271.1.S1_at11/113+7040885..7042416expressed protein
LOC_Os03g13060OsAffx.12838.1.S1_at11/113+7043089..7044959hypothetical protein
LOC_Os03g13070NANA3+7045664..7046544Pathogenesis-related protein 5 precursor, putative
LOC_Os03g13080OsAffx.3219.1.S1_at11/113+7047746..7049620Protein kinase domain containing protein
LOC_Os03g13089NANA3+7051970..7052332NA
LOC_Os03g13100Os.26893.1.S1_at11/113+7053797..7058150IBR domain containing protein, expressed
LOC_Os03g13110OsAffx.31816.1.S1_at3/113+7058666..7061399transposon protein, putative, Mariner sub-class
LOC_Os03g13120Os.53257.1.S1_at5/113+7061831..7063710hypothetical protein
LOC_Os03g13130Os.53391.1.S1_at11/113+7067416..7071607ternary complex factor MIP1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_s_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_x_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13150Os.12191.1.S1_s_at2/113+7075783..7076623Non-symbiotic hemoglobin 3, putative
LOC_Os03g13160Os.12191.1.S1_s_at2/113+7079290..7080322Non-symbiotic hemoglobin 4, putative
LOC_Os03g13170Os.12772.1.S1_at11/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13170Os.51218.1.S1_at1/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13180OsAffx.3220.1.S1_at11/113+7086366..7087553Peroxidase 53 precursor, putative, expressed
LOC_Os03g13190OsAffx.3221.1.S1_at11/113+7090057..7094241transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53391.1.S1_at--403--4371Chr03:7071157..7071181 (25 bp)
TCCACGTAAAGTTTCACGGCCCAAT
LOC_Os03g13130
Os.53391.1.S1_at--549--1931Chr03:7071172..7071196 (25 bp)
ACGGCCCAATGTACAGAGCCTTGTA
LOC_Os03g13130
Os.53391.1.S1_at--288--8731Chr03:7071193..7071217 (25 bp)
TGTAAAGTTGATATTTTGGGCCCGG
LOC_Os03g13130
Os.53391.1.S1_at--886--5551Chr03:7071231..7071255 (25 bp)
GAAAGTTAGTTATCTGGGCCTGAAA
LOC_Os03g13130
Os.53391.1.S1_at--936--8651Chr03:7071282..7071306 (25 bp)
TGTGGAACGTTCTACCTGCTTGGTC
LOC_Os03g13130
Os.53391.1.S1_at--568--8591Chr03:7071302..7071326 (25 bp)
TGGTCTCTCGGATGGCACGAACGGA
LOC_Os03g13130
Os.53391.1.S1_at--618--5751Chr03:7071328..7071352 (25 bp)
GACGATTTCCGTCTTGGTGGACAAG
LOC_Os03g13130
Os.53391.1.S1_at--832--5651Chr03:7071373..7071397 (25 bp)
GACTTGGATTCTTAAACCCGCCAAT
LOC_Os03g13130
Os.53391.1.S1_at--176--10671Chr03:7071402..7071426 (25 bp)
TTCCACGCGCCCACGTTATTGAGGG
LOC_Os03g13130
Os.53391.1.S1_at--904--7712Chr03:7071425..7071449 (25 bp)
GGGTGTTTAGATCTCACATCAAATA
LOC_Os03g13130
Os.53391.1.S1_at--104--291Chr03:7071454..7071478 (25 bp)
ATAGGTTATCGCAGGGTGTTCAGAC
LOC_Os03g13130
Target Sequence 
TCCACGTAAAGTTTCACGGCCCAATGTACAGAGCCTTGTAAAGTTGATATTTTGGGCCCGGCCCAACAAACTTGGAAAGT
TAGTTATCTGGGCCTGAAAAGAGGCCGTGGCTTTTGGNNCNTNNTTGTGGAACGTTCTACCTGCTTGGTCTCTCGGATGG
CACGAACGGACGACGATTTCCGTCTTGGTGGACAAGAAAGAAAGTGGAACGTTTTTGACTTGGATTCTTAAACCCGCCAA
TGGTTTTCCACGCGCCCACGTTATTGAGGGGTGTTTAGATCTCACATCAAATATTATATAGGTTATCGCAGGGTGTTCAG
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis