Browse Element(s) Details


Os.53402.1.S1_at

Description gb:AK072461.1
DB_XREF= gi:32982484
TID=Os.53402.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023116G20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023116G20, full insert sequence.
FL= gb:AK072461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3082411/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30790NANA12+18456342..18459454Terpene synthase, N-terminal domain containing protein
LOC_Os12g30800NANA12+18463981..18466167Ent-kaurene synthase B, chloroplast precursor, putative
LOC_Os12g30810OsAffx.31950.1.S1_at11/1112+18479824..18480471hypothetical protein
LOC_Os12g30824Os.53402.1.S1_at11/1112+18481279..18500136Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os12g30824Os.32889.2.S1_at1/1112+18481279..18500136Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os12g30824OsAffx.9141.2.A1_at1/1112+18481279..18500136Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os12g30840OsAffx.7746.1.S1_at8/1112+18502869..18503601hypothetical protein
LOC_Os12g30840OsAffx.26126.1.S1_at2/1112+18502869..18503601hypothetical protein
LOC_Os12g30850NANA12+18508128..18509277Zinc knuckle family protein
LOC_Os12g30860NANA12+18511855..18512230NA
LOC_Os12g30870NANA12+18516518..18516786NA
LOC_Os12g30880NANA12+18517539..18520520hypothetical protein
LOC_Os12g30890NANA12+18523843..18525192retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53402.1.S1_at--222--1051Chr12:18481824..18481848 (25 bp)
AGGTGAACAGCGTCTTGCTGCGTGC
LOC_Os12g30824
Os.53402.1.S1_at--911--7311Chr12:18481803..18481827 (25 bp)
GTGCTCTCACTGACAGCGGCAATAC
LOC_Os12g30824
Os.53402.1.S1_at--856--6351Chr12:18481735..18481759 (25 bp)
GATGCCGAGTCATCCATGGTGGAGA
LOC_Os12g30824
Os.53402.1.S1_at--476--7271Chr12:18481671..18481695 (25 bp)
GTCCATGCAAGGATCGCTTCTGGGA
LOC_Os12g30824
Os.53402.1.S1_at--410--9871Chr12:18481621..18481645 (25 bp)
TACAGTGAAGATGACGCCTACCGCA
LOC_Os12g30824
Os.53402.1.S1_at--949--1071Chr12:18481570..18481594 (25 bp)
AGGGCAGTGATTCTCGATCCATTGA
LOC_Os12g30824
Os.53402.1.S1_at--626--9151Chr12:18481525..18481549 (25 bp)
TGCCCAGAAACGTTGTCCTCATGAA
LOC_Os12g30824
Os.53402.1.S1_at--760--9252Chr12:523577..523610 (24 bp)
TCCTCATGAACAACCACCTTGATTG
NONE
Os.53402.1.S1_at--922--10051Chr12:18481456..18481480 (25 bp)
TAGTATGCCTAAGTCCTCAATATCT
LOC_Os12g30824
Os.53402.1.S1_at--936--5751Chr12:18481428..18481452 (25 bp)
GACGTGTTCTAGACTCTGTGTATGG
LOC_Os12g30824
Os.53402.1.S1_at--1048--4991Chr12:18481395..18481419 (25 bp)
GCATGTGAGAGTCCATCTTGTACTT
LOC_Os12g30824
Target Sequence 
AGGTGAACAGCGTCTTGCTGCGTGCTCTCACTGACAGCGGCAATACCTCGCCAGAGTCCATTGAGGCAGCCAAGGAAATA
GTAAATAGAGATGCCGAGTCATCCATGGTGGAGATGCGGAGTTTGGTGTTTAGCGAGGGTGGCCCTATTCCTCGTCCATG
CAAGGATCGCTTCTGGGAGATGTGTAAGATTGTGTTCTACTTCTACAGTGAAGATGACGCCTACCGCACACCTAAGGAGA
CGATGAGCTCGGCAAGGGCAGTGATTCTCGATCCATTGAGGTTGATACCTCCTCCATCTTGCCCAGAAACGTTGTCCTCA
TGAACAACCACCTTGATTGGTTTGTGTACAAGAGGTTATTTGAATTTTTAGTATGCCTAAGTCCTCAATATCTTTAGACG
TGTTCTAGACTCTGTGTATGGACGTGAGTGCATGTGAGAGTCCATCTTGTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis