Browse Element(s) Details


Os.53414.1.S1_at

Description gb:AK072515.1
DB_XREF= gi:32982538
TID=Os.53414.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131K07, full insert sequence.
FL= gb:AK072515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1781011/11LOB domain protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17770OsAffx.30237.2.S1_x_at11/113+9869463..9870476hypothetical protein
LOC_Os03g17780Os.25009.1.A1_at11/113+9872475..9875649WD domain containing protein, putative, expressed
LOC_Os03g17790Os.15938.1.S1_at5/113+9879055..9879343hypothetical protein
LOC_Os03g17800Os.53801.1.S1_at11/113+9883680..9886059Phosphatidylinositol transfer protein, expressed
LOC_Os03g17810Os.53414.1.S1_at11/113+9895146..9896337LOB domain protein 1, putative, expressed
LOC_Os03g17820OsAffx.12902.1.S1_at10/113+9900096..9901885hypothetical protein
LOC_Os03g17830NANA3+9908522..9909043hypothetical protein
LOC_Os03g17840Os.50752.1.S1_at1/113+9912633..9919109expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009965biological_processleaf morphogenesis
GO:0010016biological_processshoot morphogenesis
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53414.1.S1_at--1013--8751Chr03:9895484..9895508 (25 bp)
TGTACCAGCCGTTCTACGACTCGGA
LOC_Os03g17810
Os.53414.1.S1_at--400--4611Chr03:9895439..9895463 (25 bp)
GCGAGCCCCAGCTATGGACGTGATA
LOC_Os03g17810
Os.53414.1.S1_at--267--3111Chr03:9895412..9895436 (25 bp)
AATTTGCATGGTCAGCGCGGCTAGC
LOC_Os03g17810
Os.53414.1.S1_at--327--7831Chr03:9895403..9895427 (25 bp)
GGTCAGCGCGGCTAGCTAAGCTAAG
LOC_Os03g17810
Os.53414.1.S1_at--89--2671Chr03:9895376..9895400 (25 bp)
AAGCTACCATACTCCGTATTTGGCA
LOC_Os03g17810
Os.53414.1.S1_at--189--3811Chr03:9895365..9895389 (25 bp)
CTCCGTATTTGGCATGCAGGGTAAT
LOC_Os03g17810
Os.53414.1.S1_at--91--11Chr03:9895272..9895296 (25 bp)
ATAATTAGTACCTGGCGGCTTAGCT
LOC_Os03g17810
Os.53414.1.S1_at--19--1571Chr03:9895251..9895275 (25 bp)
AGCTAGTGTCGTGCTTCGAGTACAT
LOC_Os03g17810
Os.53414.1.S1_at--428--7871Chr03:9895215..9895239 (25 bp)
GGTTATACATACTTCAGCCGGCCGG
LOC_Os03g17810
Os.53414.1.S1_at--923--9651Chr03:9895202..9895226 (25 bp)
TCAGCCGGCCGGAACAGTTTATGCT
LOC_Os03g17810
Os.53414.1.S1_at--1070--631Chr03:9895182..9895206 (25 bp)
ATGCTTGCTTTCAGAGTGTTATGTT
LOC_Os03g17810
Target Sequence 
TGTACCAGCCGTTCTACGACTCGGACCTGGACTCGGCGGCGTGGGGCGAGCCCCAGCTATGGACGTGATACAAATTTGCA
TGGTCAGCGCGGCTAGCTAAGCTAAGCTAAGCTACCATACTCCGTATTTGGCATGCAGGGTAATTAATAATCTAGAGCAC
TAGTAGTAATTAAGTACTGTAATTAGAAACAGATCAGTTTAAAGAAGGAACTATAATTAGTACCTGGCGGCTTAGCTAGT
GTCGTGCTTCGAGTACATGTAACAGCAACGGTTATACATACTTCAGCCGGCCGGAACAGTTTATGCTTGCTTTCAGAGTG
TTATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis