Browse Element(s) Details


Os.53439.1.S1_at

Description gb:AK072627.1
DB_XREF= gi:32982650
TID=Os.53439.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53439 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023126M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023126M10, full insert sequence.
FL= gb:AK072627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3016010/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30130OsAffx.8356.1.S1_x_at2/114+17783882..17789827hypothetical protein
LOC_Os04g30130Os.27088.1.A1_x_at1/114+17783882..17789827hypothetical protein
LOC_Os04g30130OsAffx.14762.1.S1_at1/114+17783882..17789827hypothetical protein
LOC_Os04g30140OsAffx.26247.1.S1_at11/114+17793112..17793584hypothetical protein
LOC_Os04g30150Os.46012.2.S1_x_at8/114+17798259..17802482retrotransposon protein, putative, unclassified
LOC_Os04g30150Os.27088.1.A1_x_at5/114+17798259..17802482retrotransposon protein, putative, unclassified
LOC_Os04g30150Os.46012.3.S1_x_at5/114+17798259..17802482retrotransposon protein, putative, unclassified
LOC_Os04g30160Os.53439.1.S1_at10/114+17813628..17818005Calcium binding EGF domain containing protein, expressed
LOC_Os04g30170NANA4+17823865..17824480hypothetical protein
LOC_Os04g30180Os.52155.1.S1_at11/114+17824808..17827711F-box family protein, putative, expressed
LOC_Os04g30190OsAffx.25962.1.S1_at11/114+17829789..17835534transposon protein, putative, Mutator sub-class
LOC_Os04g30200Os.52155.1.S1_at1/114+17837152..17838621F-box domain containing protein, expressed
LOC_Os04g30210Os.18061.1.S1_at11/114+17840338..17843102F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53439.1.S1_at--653--4671Chr04:17814149..17814173 (25 bp)
GCGGGCTGCAGATCTAGTGAGTCAA
LOC_Os04g30160
Os.53439.1.S1_at--921--2991Chr04:17814092..17814116 (25 bp)
AATGACACTAGTGGCAGCGGAGCTC
LOC_Os04g30160
Os.53439.1.S1_at--428--5891Chr04:17814074..17814097 (24 bp)
GAGCTCCGCCGATTAGCGGAAGCAT
LOC_Os04g30160
Os.53439.1.S1_at--490--5331Chr04:17814046..17814070 (25 bp)
GAAGTGAAGCGAAGCCCACAGCCAC
LOC_Os04g30160
Os.53439.1.S1_at--88--4371Chr04:17814025..17814049 (25 bp)
CCACCATTGGTGCTCGAGGATCTGA
LOC_Os04g30160
Os.53439.1.S1_at--577--8571Chr04:17813994..17814018 (25 bp)
TGGATATGGGCAGTACAACGAACAC
LOC_Os04g30160
Os.53439.1.S1_at--973--4611Chr04:17813899..17813923 (25 bp)
GCGAGATGATCGATGTATTACTTGT
LOC_Os04g30160
Os.53439.1.S1_at--265--131Chr04:17813883..17813907 (25 bp)
ATTACTTGTTATATTGATTCCCTTG
LOC_Os04g30160
Os.53439.1.S1_at--789--11Chr04:17813871..17813895 (25 bp)
ATTGATTCCCTTGTGTCGTTTTCTA
LOC_Os04g30160
Os.53439.1.S1_at--741--7171Chr04:17813857..17813881 (25 bp)
GTCGTTTTCTAGTGCGTGTTGGATT
LOC_Os04g30160
Os.53439.1.S1_at--679--2131Chr04:17813628..17813652 (25 bp)
ACAGTACTTCTTTTATTGTTGTTGC
NONE
Target Sequence 
GCGGGCTGCAGATCTAGTGAGTCAATGCTTGGTTGTTCCGGGTACGACAAGGCCATCAATGACACTAGTGGCAGCGGAGC
TCCGCCGATTAGCGGAAGCATATGAAGTGAAGCGAAGCCCACAGCCACCATTGGTGCTCGAGGATCTGAGATTTATGGAT
ATGGGCAGTACAACGAACACTTTGTATGGAGAGAGCAGGACGAGTGGGGCTTATAGCTTGGAGAAGAAAGCTGTGTTGAG
TATAGAGTTTGCGAGATGATCGATGTATTACTTGTTATATTGATTCCCTTGTGTCGTTTTCTAGTGCGTGTTGGATTTAG
TGTTCTTCCTCACTTTGGGGGTGGAGGATCTGGTTTAGTTTTTTTTTTATTTTTGACTTGAGGATCTGGTTTAGTTGTGT
GTGATAGTGAAACATTTGTTGTGTGGATGTGGAGTAACAGTACAAGAACCTGTAAAACATTATAGCATTAAGTGTATTCT
ATAACTAATGATTAGTAGAATTGTAATCTAACAAAACTATACAGTACTTCTTTTATTGTTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis