Browse Element(s) Details


Os.53495.1.S1_at

Description gb:AK072944.1
DB_XREF= gi:32982967
TID=Os.53495.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150L12, full insert sequence.
FL= gb:AK072944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4898010/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48950Os.22271.2.S1_x_at10/116+29656481..29664197Auxin response factor family protein
LOC_Os06g48960Os.6825.1.S1_at11/116+29664348..29666374avirulence-responsive protein, putative, expressed
LOC_Os06g48970Os.8912.1.S1_at11/116+29669441..296725033-phosphoinositide-dependent protein kinase-1, putative, expressed
LOC_Os06g48970Os.50339.1.S1_at1/116+29669441..296725033-phosphoinositide-dependent protein kinase-1, putative, expressed
LOC_Os06g48980Os.53495.1.S1_at10/116+29674137..29677083Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g48980Os.53495.1.S1_x_at10/116+29674137..29677083Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g48990Os.53518.1.S1_at11/116+29678420..29681810NB-ARC domain containing protein, expressed
LOC_Os06g49000Os.49707.2.S1_x_at11/116+29695562..29702209expressed protein
LOC_Os06g49000Os.49707.1.S1_at11/116+29695562..29702209expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53495.1.S1_at--722--10731NONE
TTGACACAGATATGAAGGCGAAGCT
NONE
Os.53495.1.S1_at--1120--9671Chr06:29674559..29674583 (25 bp)
TCACCGCGATGAGCGACGTCTACGG
LOC_Os06g48980
Os.53495.1.S1_at--1010--4471Chr06:29674476..29674500 (25 bp)
GCCGGCTGCAGCAAGTGCAACCTCG
LOC_Os06g48980
Os.53495.1.S1_at--53--5051Chr06:29674469..29674493 (25 bp)
GCAGCAAGTGCAACCTCGTCGACTG
LOC_Os06g48980
Os.53495.1.S1_at--182--6031Chr06:29674410..29674434 (25 bp)
GAGAGGATCGTCGACCGCCGGATGG
LOC_Os06g48980
Os.53495.1.S1_at--553--1791Chr06:29674310..29674334 (25 bp)
ACTGCCTCAGCCAGAACCCCAAGGT
LOC_Os06g48980
Os.53495.1.S1_at--77--9631Chr06:29674286..29674310 (25 bp)
TCAGGCCCACCATGGGCAGGGTCGT
LOC_Os06g48980
Os.53495.1.S1_at--242--1731Chr06:29674278..29674302 (25 bp)
ACCATGGGCAGGGTCGTGCACGTCC
LOC_Os06g48980
Os.53495.1.S1_at--452--8251Chr06:29674272..29674296 (25 bp)
GGCAGGGTCGTGCACGTCCTCGAGG
LOC_Os06g48980
Os.53495.1.S1_at--732--4211Chr06:29674163..29674187 (25 bp)
CCGCCGGCCGGTTATATGTATAGAT
LOC_Os06g48980
Os.53495.1.S1_at--1155--3911Chr06:29674159..29674183 (25 bp)
CGGCCGGTTATATGTATAGATGTAC
LOC_Os06g48980
Target Sequence 
TTGACACAGATATGAAGGCGAAGCTGTCGGATTTCGGGCTGGCGAAGGAGAGGCCGCGGGGAGGGAAGACGCACGTGTCG
ACGAGGGTGATGGGGACGTACGGCTACGCGGCGCCGGAGTACGTCGCCACGGGCCACCTCACCGCGATGAGCGACGTCTA
CGGCTTCGGCGTCGTCCTGCTCGAGATGCTCGTCGGCCGCCGCGCGCTCGAGCCGCCGGCCGCCGGCTGCAGCAAGTGCA
ACCTCGTCGACTGGGCCCGCCCCATCCTCATCCGGCCCAAGAAGCTGGAGAGGATCGTCGACCGCCGGATGGCGCTGCCG
GCGCCGGCGGCGGACTACGGCGGCGGCGTCGACGCCGCCGTCGAGCGGGTGGCGCGCCTCGCCTACGACTGCCTCAGCCA
GAACCCCAAGGTCAGGCCCACCATGGGCAGGGTCGTGCACGTCCTCGAGGCCGTCCTCGCCGACCACCACCACCACGCCG
GTGCTGCTGCCGCCGCTGCACGGCCGGCAGCCGCCGCCGCCGCCGCCACCGCCACCGCCGGCCGGTTATATGTATAGATG
TAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis