Browse Element(s) Details


Os.53498.1.S1_at

Description gb:AK072955.1
DB_XREF= gi:32982978
TID=Os.53498.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023146I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146I19, full insert sequence.
FL= gb:AK072955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3688011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36830OsAffx.28785.1.S1_at10/117+22064721..22069602F-box domain containing protein
LOC_Os07g36840OsAffx.5552.1.S1_at11/117+22072044..22073273F-box domain containing protein
LOC_Os07g36850NANA7+22074147..22075069transposon protein, putative, Pong sub-class
LOC_Os07g36860OsAffx.16590.1.S1_at11/117+22075496..22077485hypothetical protein
LOC_Os07g36870OsAffx.5553.1.S1_at11/117+22080910..22082154F-box domain containing protein, expressed
LOC_Os07g36880Os.53498.1.S1_at11/117+22086306..22088716F-box domain containing protein, expressed
LOC_Os07g36890OsAffx.28786.1.S1_at11/117+22089230..22091643F-box domain containing protein
LOC_Os07g36900OsAffx.5554.1.S1_at11/117+22093436..22097583F-box domain containing protein
LOC_Os07g36910Os.22823.1.A1_at11/117+22100223..22103458F-box domain containing protein, expressed
LOC_Os07g36920Os.16363.1.S1_at11/117+22105972..22108442F-box domain containing protein, expressed
LOC_Os07g36930Os.51668.1.S1_at10/117+22109132..22111980expressed protein
LOC_Os07g36940Os.15271.1.S3_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S2_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S1_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S4_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.51591.1.S1_at2/117+22113267..22121435MIF4G domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53498.1.S1_at--1030--3191Chr07:22087405..22087429 (25 bp)
CAAGGGTTTCCTCATGACTTTAGGC
LOC_Os07g36880
Os.53498.1.S1_at--1069--251Chr07:22087493..22087517 (25 bp)
ATATGCCATCATATCTCCGGACATG
LOC_Os07g36880
Os.53498.1.S1_at--1069--8091Chr07:22087511..22087535 (25 bp)
GGACATGTACGCTGGTTTTCCACCA
LOC_Os07g36880
Os.53498.1.S1_at--18--3611Chr07:22087538..22087562 (25 bp)
CTTGTCACCACCAGCTATTTGAAGT
LOC_Os07g36880
Os.53498.1.S1_at--225--3051Chr07:22088360..22088384 (25 bp)
AATCTGCACGCAGTTGAGGCTTCGT
LOC_Os07g36880
Os.53498.1.S1_at--454--7591Chr07:22088403..22088427 (25 bp)
GGGCTTCGTCGCTTTGAGTTACAAG
LOC_Os07g36880
Os.53498.1.S1_at--29--8591Chr07:22088443..22088467 (25 bp)
TGGTTCACCTCTTCTATGCTAGTTT
LOC_Os07g36880
Os.53498.1.S1_at--593--451Chr07:22088458..22088482 (25 bp)
ATGCTAGTTTAGTTCGGTCGGTTAT
LOC_Os07g36880
Os.53498.1.S1_at--432--231Chr07:22088515..22088539 (25 bp)
ATATATCGTCCTCCTTGATGCATAG
LOC_Os07g36880
Os.53498.1.S1_at--268--2991Chr07:22088656..22088680 (25 bp)
AATGTCTGATGCTAGCTGCTCGCAA
LOC_Os07g36880
Os.53498.1.S1_at--578--5131Chr07:22088684..22088708 (25 bp)
GCAAATGATGGTTCCAAGCCCTCAT
LOC_Os07g36880
Target Sequence 
CAAGGGTTTCCTCATGACTTTAGGCCAAAGAAACTCTGCTTTCACTGAATCTCAGGACATTCAAGCTTGAGTGGTTTTGT
GGGACTACATATGCCATCATATCTCCGGACATGTACGCTGGTTTTCCACCAACCTTGTCACCACCAGCTATTTGAAGTGG
GTGGTTAATCTGCACGCAGTTGAGGCTTCGTCTACGTCATGCGCTGGTGGGGCTTCGTCGCTTTGAGTTACAAGGATGGC
TGGCTATGGTGGTTCACCTCTTCTATGCTAGTTTAGTTCGGTCGGTTATGTACCTATCAATGATGATTGATGTCAAGCAA
TATATATCGTCCTCCTTGATGCATAGATAACTCTAGCACTACATATCTATTTGGTTTTTGAGACGTACTCTTAAGTGTAC
TTACTAAAGTCTTATGTTGCAATATCCAGTTTGAAATCAAACTTAGTGATTGGATGATGTCAAATGTCTGATGCTAGCTG
CTCGCAAAAGGCAAATGATGGTTCCAAGCCCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis