Browse Element(s) Details


Os.53529.1.S1_at

Description gb:AK073122.1
DB_XREF= gi:32983145
TID=Os.53529.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033003A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033003A15, full insert sequence.
FL= gb:AK073122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3757011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37520Os.16267.1.S1_at11/119+21630389..21636245expressed protein
LOC_Os09g37530OsAffx.30172.1.S1_at11/119+21636693..21637462hypothetical protein
LOC_Os09g37540Os.15026.1.S1_at10/119+21642247..21644235expressed protein
LOC_Os09g37550Os.14491.2.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37550Os.47463.1.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37560OsAffx.18029.1.S1_at11/119+21651440..21652048hypothetical protein
LOC_Os09g37570Os.53529.1.S1_at11/119+21652596..21654852F-box domain containing protein, expressed
LOC_Os09g37580OsAffx.30173.1.S1_at9/119+21655731..21663947expressed protein
LOC_Os09g37590OsAffx.18031.1.S1_at11/119+21666226..21673416Plant protein family protein, expressed
LOC_Os09g37600Os.5985.1.S1_at11/119+21676997..21679762LysM domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53529.1.S1_at--932--10411Chr09:21653822..21653846 (25 bp)
TTATCCACTACGTTGTATCCTTAGG
LOC_Os09g37570
Os.53529.1.S1_at--359--6911Chr09:21653836..21653860 (25 bp)
GTATCCTTAGGCAGTCACCAATGTT
LOC_Os09g37570
Os.53529.1.S1_at--611--3371Chr09:21654392..21654416 (25 bp)
CACCATTTTGGTGTGATCGCCTGAA
LOC_Os09g37570
Os.53529.1.S1_at--313--1351Chr09:21654449..21654473 (25 bp)
AGAGATTTGTCGCTTTGCTGCAACT
LOC_Os09g37570
Os.53529.1.S1_at--171--1111Chr09:21654521..21654545 (25 bp)
AGTGGGTTAGTGCTCAGCCTCCCGA
LOC_Os09g37570
Os.53529.1.S1_at--1002--9291Chr09:21654540..21654564 (25 bp)
TCCCGATTCGTCTGAGCTTTGAAGG
LOC_Os09g37570
Os.53529.1.S1_at--782--211Chr09:21654594..21654618 (25 bp)
ATTTGTATCCTTATCATCTACTCCC
LOC_Os09g37570
Os.53529.1.S1_at--1023--7831Chr09:21654653..21654677 (25 bp)
GGTACGTTGTCCAGATTCATAATAT
LOC_Os09g37570
Os.53529.1.S1_at--593--971Chr09:21654755..21654779 (25 bp)
AGGAGTTCGTGCTACCTTGCGGGCT
LOC_Os09g37570
Os.53529.1.S1_at--762--4311Chr09:21654769..21654793 (25 bp)
CCTTGCGGGCTTGTGATATCTATTT
LOC_Os09g37570
Os.53529.1.S1_at--1091--831Chr09:21654801..21654825 (25 bp)
ATGGAGATGCCTGGCGCCATGATAA
LOC_Os09g37570
Target Sequence 
TTATCCACTACGTTGTATCCTTAGGCAGTCACCAATGTTAGAGGAGCTCTGTGTGGAACTTGGGGAGGAGGAGTGTGAGA
ATTGCAAGAACAGAAAACCAGCTTTCTCATATGGGGAAATATCACCATTTTGGTGTGATCGCCTGAAGACCATCAAAATC
AAATGTACCGAACATGATGAGAGATTTGTCGCTTTGCTGCAACTGTTTTGCAAGATCTTAGTCTGTATTGAGGAAGTTGA
CATAGATAGGCAGTGGGTTAGTGCTCAGCCTCCCGATTCGTCTGAGCTTTGAAGGCCACAGAAAAACCTGGCAAATGTCT
AATGATTTGTATCCTTATCATCTACTCCCCCGTCCAAAAAAACTAAATCTCGTACTAGATATTGGTACGTTGTCCAGATT
CATAATATTATAATATGTCAACGTCTAATATGAGGTTTAGTTTTTTTAGACGGAGGGAGTAGTACACAACCTTGATAGCA
CTGGCAGGAGTTCGTGCTACCTTGCGGGCTTGTGATATCTATTTTGTTGCCATGGAGATGCCTGGCGCCATGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis