Browse Element(s) Details


Os.5354.1.S1_at

Description gb:AK107952.1
DB_XREF= gi:32993161
TID=Os.5354.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-B12, full insert sequence.
FL= gb:AK107952.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0622011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06180OsAffx.7498.1.S1_at11/1112+2930759..2933408HVA22-like protein j, putative, expressed
LOC_Os12g06190OsAffx.31611.1.S1_s_at11/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.19151.1.S1_at1/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.6844.1.S1_x_at1/1112+2933608..2934619expressed protein
LOC_Os12g06200Os.424.1.S1_at11/1112+2938696..2944050Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os12g06210OsAffx.19519.1.S1_at11/1112+2946868..2947542Harpin-induced protein 1 containing protein
LOC_Os12g06220Os.5354.1.S1_at11/1112+2949703..2950593Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06230OsAffx.7499.1.S1_at11/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.12219.1.A1_at10/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.7578.1.S1_at5/1112+2952126..2965407hypothetical protein
LOC_Os12g06240OsAffx.31612.1.S1_at10/1112+2966582..2967203hypothetical protein
LOC_Os12g06250Os.54124.1.S1_at11/1112+2969930..2973161expressed protein
LOC_Os12g06250Os.54124.1.S2_at11/1112+2969930..2973161expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5354.1.S1_at--403--9291Chr12:2950254..2950278 (25 bp)
TCCGCGTCAACATCTACTACGACGA
LOC_Os12g06220
Os.5354.1.S1_at--136--3931Chr12:2950170..2950194 (25 bp)
CGGCCGAGTTCTACCAGCGGCGGAA
LOC_Os12g06220
Os.5354.1.S1_at--30--5371Chr12:2950148..2950172 (25 bp)
GAAGAGCTCCGACGACGTGACGTTT
LOC_Os12g06220
Os.5354.1.S1_at--387--3991Chr12:2950133..2950157 (25 bp)
CGTGACGTTTGAGTTCGCCGGGACA
LOC_Os12g06220
Os.5354.1.S1_at--724--7391Chr12:2950018..2950042 (25 bp)
GTGAGGTACAGGTTCGGCAGCATCA
LOC_Os12g06220
Os.5354.1.S1_at--18--8271Chr12:2950003..2950027 (25 bp)
GGCAGCATCAAGATCCGGCAGAAGC
LOC_Os12g06220
Os.5354.1.S1_at--754--1671Chr12:2949981..2950005 (25 bp)
AGCCGAGGATATGGTGCTCGCTCAC
LOC_Os12g06220
Os.5354.1.S1_at--1113--8371Chr12:2949916..2949940 (25 bp)
GGCGACCGGTGTAGCGTCAAGTACT
LOC_Os12g06220
Os.5354.1.S1_at--544--10571Chr12:2949837..2949861 (25 bp)
TTCTTTCAGATTTGTGAGCCACTTG
LOC_Os12g06220
Os.5354.1.S1_at--132--5871Chr12:2949822..2949846 (25 bp)
GAGCCACTTGTTGATTTGTTTCTGT
LOC_Os12g06220
Os.5354.1.S1_at--1041--6471Chr12:2949720..2949744 (25 bp)
GATACTACTATCCTTGAATTTCAAT
LOC_Os12g06220
Target Sequence 
TCCGCGTCAACATCTACTACGACGAGCTCGACTCCGAGCTCCGCTTCCGCGGCGAGCGCCTCGGCCACGCCACCGGCGCC
ACCCCGGCCGAGTTCTACCAGCGGCGGAAGAGCTCCGACGACGTGACGTTTGAGTTCGCCGGGACAGGCGTCGCCGTCGC
CGGCGACGCCGCCGGCGAGCTGGGGAAGGAGAAGGGGAAGGGCAGCGTNGAGCCTGGAGGTGGCCGTCGACGGCAAGGTG
AGGTACAGGTTCGGCAGCATCAAGATCCGGCAGAAGCCGAGGATATGGTGCTCGCTCACCATCCCCGTCACGGCCGACGG
CGGCGGCCGCCTCGACTCCGGCGACCGGTGTAGCGTCAAGTACTAGAGGAGCTAGCTAGCTAGTGGGCAATGATTTGAGT
GTATTAAATTGTTTTTCTTTCTTTCAGATTTGTGAGCCACTTGTTGATTTGTTTCTGTGAAAATACATTCATATTTTTGT
ATTTTTTTTTGGGTGTAGGGTGTCAGTGATAATCGTTNGTTCCAACTGTATTATGTGATACTACTATCCTTGAATTTCAA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis