Browse Element(s) Details


Os.53544.1.S1_at

Description gb:AK073212.1
DB_XREF= gi:32983235
TID=Os.53544.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033003M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033003M09, full insert sequence.
FL= gb:AK073212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2721011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27160NANA12+15937808..15940036retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27170NANA12+15942478..15944300retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27180NANA12+15947988..15948341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27190OsAffx.19847.1.S1_at11/1112+15954819..15959208expressed protein
LOC_Os12g27200OsAffx.7711.1.S1_at11/1112+15960022..15960786hypothetical protein
LOC_Os12g27210Os.53544.1.S1_at11/1112+15963259..15965871expressed protein
LOC_Os12g27220OsAffx.19849.1.S1_x_at2/1112+15967110..15970797Transferase family protein, expressed
LOC_Os12g27220OsAffx.19849.1.S1_at2/1112+15967110..15970797Transferase family protein, expressed
LOC_Os12g27230OsAffx.10637.1.S1_s_at10/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.3.S1_s_at7/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.4.S1_s_at6/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.2.S1_at1/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27240OsAffx.32056.1.S1_x_at7/1112+15980282..15984976transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53544.1.S1_at--411--10591Chr12:15965332..15965356 (25 bp)
TTCTGTACACAGAATGGCAATATAC
LOC_Os12g27210
Os.53544.1.S1_at--1061--8211Chr12:15965347..15965371 (25 bp)
GGCAATATACACATTTGCATTGATG
LOC_Os12g27210
Os.53544.1.S1_at--224--6291Chr12:15965368..15965392 (25 bp)
GATGATATTCTTTGTCGATCGACAA
LOC_Os12g27210
Os.53544.1.S1_at--67--6331Chr12:15965511..15965535 (25 bp)
GATCTTTAGGGCTCAGAATAGATAG
LOC_Os12g27210
Os.53544.1.S1_at--735--5231Chr12:15965526..15965550 (25 bp)
GAATAGATAGATGATTGTGCCGATA
LOC_Os12g27210
Os.53544.1.S1_at--895--811Chr12:15965572..15965596 (25 bp)
ATGGTGCAGGTCTTTTAGCTTCGTA
LOC_Os12g27210
Os.53544.1.S1_at--917--1011Chr12:15965579..15965603 (25 bp)
AGGTCTTTTAGCTTCGTATCTGGAG
LOC_Os12g27210
Os.53544.1.S1_at--521--9751Chr12:15965664..15965688 (25 bp)
TAAGTCAAGTCAAGGCAGTGATCAC
LOC_Os12g27210
Os.53544.1.S1_at--531--8271Chr12:15965677..15965701 (25 bp)
GGCAGTGATCACAAATTATGTTGTA
LOC_Os12g27210
Os.53544.1.S1_at--380--2511Chr12:15965819..15965843 (25 bp)
AACATTTTTCTTATGCTATAGCCAT
LOC_Os12g27210
Os.53544.1.S1_at--390--631Chr12:15965831..15965855 (25 bp)
ATGCTATAGCCATTTCTATATCTGC
LOC_Os12g27210
Target Sequence 
TTCTGTACACAGAATGGCAATATACACATTTGCATTGATGATATTCTTTGTCGATCGACAATCTTATATTGGCTATTGTG
ATGCATACATCATCAGAAATTCTCTGTAAGCCTGACAATCTTGGCATATTACACATATATTTGGATCATGCAATTAATTT
TCTATGAGACAAACCTCAGGATCTTTAGGGCTCAGAATAGATAGATGATTGTGCCGATATTAAGGTAATGATATGATTTG
ATGGTGCAGGTCTTTTAGCTTCGTATCTGGAGGAAGCTCAATTATTCTATGAATCATATTGTCACCAGTACATTGGGTCA
ATATTGGGTCTATAAGTCAAGTCAAGGCAGTGATCACAAATTATGTTGTACATCTAGCAACCAAATATTTATTTGGCTCA
ATTGAAGATTTCAGTATTTGTAAGAACTTTACTAGACCGCGATTACTACATTTTTAAATTCAGTGCAGGCCCTATGTATA
ACAAGCTAACATTTTTCTTATGCTATAGCCATTTCTATATCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis