Browse Element(s) Details


OsAffx.19847.1.S1_at

Description tigr:9640.m02613
TID=OsAffx.19847.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2719011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27150NANA12+15928891..15935542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27160NANA12+15937808..15940036retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27170NANA12+15942478..15944300retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27180NANA12+15947988..15948341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27190OsAffx.19847.1.S1_at11/1112+15954819..15959208expressed protein
LOC_Os12g27200OsAffx.7711.1.S1_at11/1112+15960022..15960786hypothetical protein
LOC_Os12g27210Os.53544.1.S1_at11/1112+15963259..15965871expressed protein
LOC_Os12g27220OsAffx.19849.1.S1_x_at2/1112+15967110..15970797Transferase family protein, expressed
LOC_Os12g27220OsAffx.19849.1.S1_at2/1112+15967110..15970797Transferase family protein, expressed
LOC_Os12g27230OsAffx.10637.1.S1_s_at10/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.3.S1_s_at7/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.4.S1_s_at6/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.2.S1_at1/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27240OsAffx.32056.1.S1_x_at7/1112+15980282..15984976transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19847.1.S1_at--265--8011Chr12:15957904..15957928 (25 bp)
GGAGGCCATCCTTGGGAAGCCACCG
LOC_Os12g27190
OsAffx.19847.1.S1_at--1152--5411Chr12:15957919..15957943 (25 bp)
GAAGCCACCGGATTGCTGGACATTC
LOC_Os12g27190
OsAffx.19847.1.S1_at--969--4711Chr12:15957933..15957957 (25 bp)
GCTGGACATTCATAGATCCGCAATG
LOC_Os12g27190
OsAffx.19847.1.S1_at--680--3051Chr12:15957972..15957996 (25 bp)
AATCTATGCAGATCCGGGAGGCGCT
LOC_Os12g27190
OsAffx.19847.1.S1_at--366--8011Chr12:15957988..15958012 (25 bp)
GGAGGCGCTGCAACATAGGACAGTT
LOC_Os12g27190
OsAffx.19847.1.S1_at--208--6671Chr12:15958010..15958034 (25 bp)
GTTGCAAGATTCGAGTTCCTGGAGG
LOC_Os12g27190
OsAffx.19847.1.S1_at--38--6311Chr12:15958037..15958061 (25 bp)
GATGAGGAACCAAAGGGCCTTCTCT
LOC_Os12g27190
OsAffx.19847.1.S1_at--1003--5331Chr12:15958073..15958097 (25 bp)
GAAGTTTCTCCAGCTCATAGTTATA
LOC_Os12g27190
OsAffx.19847.1.S1_at--200--6091Chr12:15958401..15958425 (25 bp)
GAGTAGCATTCCTTCTAGTTCATTT
LOC_Os12g27190
OsAffx.19847.1.S1_at--460--10551Chr12:15958419..15958443 (25 bp)
TTCATTTTCTTGTCCTACTCGGAGG
LOC_Os12g27190
OsAffx.19847.1.S1_at--266--8251Chr12:15958917..15958941 (25 bp)
GGCACTCCATCAATTGATCCTTGAC
LOC_Os12g27190
Target Sequence 
GGAGGCCATCCTTGGGAAGCCACCGGATTGCTGGACATTCATAGATCCGCAATGTGCTGAGACAGGGAAATCTATGCAGA
TCCGGGAGGCGCTGCAACATAGGACAGTTGCAAGATTCGAGTTCCTGGAGGGAGATGAGGAACCAAAGGGCCTTCTCTTG
TTTCTCGGTGAAGTTTCTCCAGCTCATAGTTATACTGGAAGCTTAACATTATCAGAGACATGGAGAAGAGTGACTGGAGA
TGGCAAGAGTAGCATTCCTTCTAGTTCATTTTCTTGTCCTACTCGGAGGGGACAAAGGTCAAAGGCACTCCATCAATTGA
TCCTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis