Browse Element(s) Details


Os.53552.1.S1_at

Description gb:AK073253.1
DB_XREF= gi:32983276
TID=Os.53552.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023F07, full insert sequence.
FL= gb:AK073253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0528011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05250OsAffx.30226.2.S1_s_at7/115+2552234..2552791retrotransposon protein, putative, unclassified
LOC_Os05g05250OsAffx.442.1.S1_x_at3/115+2552234..2552791retrotransposon protein, putative, unclassified
LOC_Os05g05260Os.53756.1.S1_at9/115+2562822..2568136DNA repair helicase UVH6, putative, expressed
LOC_Os05g05270Os.49091.1.S1_at11/115+2573518..2576476sucrose-phosphatase, putative, expressed
LOC_Os05g05280Os.53552.1.S1_at11/115+2576565..2582182zinc finger family protein, putative, expressed
LOC_Os05g05280Os.2852.1.S1_at1/115+2576565..2582182zinc finger family protein, putative, expressed
LOC_Os05g05290Os.55368.1.S1_at11/115+2583464..2584282expressed protein
LOC_Os05g05300NANA5+2587556..2590142group II intron splicing factor CRS1, putative, expressed
LOC_Os05g05310Os.5008.1.S1_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05310Os.5008.1.S2_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05320Os.10857.1.S1_at11/115+2596186..2602317expressed protein
LOC_Os05g05320OsAffx.27710.1.S1_at2/115+2596186..2602317expressed protein
LOC_Os05g05330Os.10713.1.S1_at7/115+2603989..2608259expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53552.1.S1_at--54--10692Chr05:2577106..2577130 (25 bp)
TTCCATGTGGAGTGCATCGACCAGT
LOC_Os05g05280
Os.53552.1.S1_at--757--1091Chr05:2577084..2577108 (25 bp)
AGTGGCTCCGGCTGAATGTCAAGTG
LOC_Os05g05280
Os.53552.1.S1_at--830--1671Chr05:2576922..2576946 (25 bp)
AGCCGGCTGGGCAGAGCTACCTGCT
LOC_Os05g05280
Os.53552.1.S1_at--685--5971Chr05:2576827..2576851 (25 bp)
GAGAACGGCGCTTCTCATGTGGCCG
LOC_Os05g05280
Os.53552.1.S1_at--627--3991Chr05:2576771..2576795 (25 bp)
CGTGGAGAGCGAGCTGCCTAGCATA
LOC_Os05g05280
Os.53552.1.S1_at--996--4771Chr05:2576759..2576783 (25 bp)
GCTGCCTAGCATAGTGGTTGACGGT
LOC_Os05g05280
Os.53552.1.S1_at--204--8651Chr05:2576735..2576759 (25 bp)
TGGGCATCAGCTGCCGGATCGCTGA
LOC_Os05g05280
Os.53552.1.S1_at--1022--5731Chr05:2576699..2576723 (25 bp)
GACGGCGTGATGTAGACTGATAGTT
LOC_Os05g05280
Os.53552.1.S1_at--302--6171Chr05:2576657..2576681 (25 bp)
GAGGATCGAAGCTATGCAGCAGCAT
LOC_Os05g05280
Os.53552.1.S1_at--344--10271Chr05:2576620..2576644 (25 bp)
TTTGATCTTATCTCCTGTGTGCAGA
LOC_Os05g05280
Os.53552.1.S1_at--329--10231Chr05:2576567..2576590 (24 bp)
TATTGCAAGCTTTTGTTTCCCTTTC
LOC_Os05g05280
Target Sequence 
TTCCATGTGGAGTGCATCGACCAGTGGCTCCGGCTGAATGTCAAGTGCCCCCGTTGCCGGTGCTCCGTCTTCCCCAACCT
CGACCTGAGCGCGCTCAACAACCTCCGGCCATCCTCCGAGCCGGACCGGCCGTCGGCCAGCGAGGTGACAGCGGCGACGA
TGGCGCGGTACGTGAGGTCGTCGCAGCCGGCTGGGCAGAGCTACCTGCTGCGGCTGCAGGGGCTGCTGCTGCGGCAGGTG
GTGGTTCGGCACGGCGGCGGCGACGACATGGCGAGCGCCGAGAACGGCGCTTCTCATGTGGCCGCCGCGGTGACCGCGCC
GGCGACCACCGGCGGCGTGGAGAGCGAGCTGCCTAGCATAGTGGTTGACGGTGGGCATCAGCTGCCGGATCGCTGAAGCG
CCCGGTGGACGGCGTGATGTAGACTGATAGTTATATGTGTGGGGAAGGGGAGGATCGAAGCTATGCAGCAGCATGTTTTT
TTTTTCTTTGATCTTATCTCCTGTGTGCAGAGTGTATAAATATTATGTAAAGGAGATCATTATTGCAAGCTTTTGTTTCC
CTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis