Browse Element(s) Details


Os.53555.1.S1_at

Description gb:AK073263.1
DB_XREF= gi:32983286
TID=Os.53555.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024K20, full insert sequence.
FL= gb:AK073263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3155011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31519NANA7+18709193..18709585NA
LOC_Os07g31530OsAffx.1383.1.S1_at11/117+18712239..18715219retrotransposon protein, putative, unclassified
LOC_Os07g31540Os.26354.1.S1_a_at11/117+18715340..18723960Ubiquitin family protein, expressed
LOC_Os07g31540Os.26354.2.S1_x_at10/117+18715340..18723960Ubiquitin family protein, expressed
LOC_Os07g31550Os.53555.1.S1_at11/117+18726294..18731858expressed protein
LOC_Os07g31560OsAffx.28701.2.S1_at11/117+18738691..18739715hypothetical protein
LOC_Os07g31570NANA7+18741704..18742150hypothetical protein
LOC_Os07g31590NANA7+18753563..18757440retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53555.1.S1_at--109--6171Chr07:18731268..18731292 (25 bp)
GAGGAACTTTTCTCTTTGGACAACA
LOC_Os07g31550
Os.53555.1.S1_at--326--5392Chr07:18731307..18731331 (25 bp)
GAAGCACGCTTGGTAAACCAGCACT
LOC_Os07g31550
Os.53555.1.S1_at--402--1711Chr07:18731323..18731347 (25 bp)
ACCAGCACTTGGTGAGGGCTCTTGA
LOC_Os07g31550
Os.53555.1.S1_at--286--6851Chr07:18731455..18731479 (25 bp)
GTTTGCCAGGGCCAACAGATACATG
LOC_Os07g31550
Os.53555.1.S1_at--19--9871Chr07:18731474..18731498 (25 bp)
TACATGGAACGATTTGCTAGCAGCA
LOC_Os07g31550
Os.53555.1.S1_at--149--2431Chr07:18731529..18731553 (25 bp)
AAAACGTTGAGACTCTTTTGCTTGA
LOC_Os07g31550
Os.53555.1.S1_at--544--5391Chr07:18731592..18731616 (25 bp)
GAAGCATCGATCGTTGCACAGCATT
LOC_Os07g31550
Os.53555.1.S1_at--753--1931Chr07:18731637..18731661 (25 bp)
ACGGCAGCTTCTTCATATAGGCATT
LOC_Os07g31550
Os.53555.1.S1_at--39--3991Chr07:18731728..18731752 (25 bp)
CGGTGGGTGAGGTACTTCTGTTCAA
LOC_Os07g31550
Os.53555.1.S1_at--586--7951Chr07:18731769..18731793 (25 bp)
GGATAGTGATTCTGTCCATCTGTAA
LOC_Os07g31550
Os.53555.1.S1_at--308--7271Chr07:18731782..18731806 (25 bp)
GTCCATCTGTAAACTGCTTCCTAAA
LOC_Os07g31550
Target Sequence 
GAGGAACTTTTCTCTTTGGACAACAATGGCACAAACGTAGAAGCACGCTTGGTAAACCAGCACTTGGTGAGGGCTCTTGA
AAAGTCTACTTTCAATGTTCTGAATATAACTGGAATGAGTGAATTCAGAGCTGATGCTCATCCTTCAACAACTGGTGGGA
AGAAGCATGATGATTGCATGCATTGGTGTTTGCCAGGGCCAACAGATACATGGAACGATTTGCTAGCAGCAAATCTATTG
GCGACTGAGAGTTAGTTTGACAAAACGTTGAGACTCTTTTGCTTGAGAAATTCTCCCGAGATTTTTGTGGGTTGTGAACA
TGATGAAGCATCGATCGTTGCACAGCATTGTTTTGATCAAAGCTTATTCACGGCAGCTTCTTCATATAGGCATTAGAGTA
TTGAGCATTAGACAATGTAAAGTTAACTTCATTTTTGTGTCATTGTGTGTGTGTTTTGGGCGGTGGGTGAGGTACTTCTG
TTCAAATTTGTCCTAGAGTTTGGATAGTGATTCTGTCCATCTGTAAACTGCTTCCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis