Browse Element(s) Details


Os.53594.1.S1_at

Description gb:AK073471.1
DB_XREF= gi:32983494
TID=Os.53594.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044N23, full insert sequence.
FL= gb:AK073471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1488011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14820OsAffx.14697.1.S1_at10/115+8406710..8408708lysine and histidine specific transporter, putative, expressed
LOC_Os05g14820Os.51403.1.S1_at1/115+8406710..8408708lysine and histidine specific transporter, putative, expressed
LOC_Os05g14830NANA5+8409835..8410271hypothetical protein
LOC_Os05g14840OsAffx.4339.1.S1_at9/115+8413389..8414614hypothetical protein
LOC_Os05g14850Os.52782.1.S1_at1/115+8417761..8418776hypothetical protein
LOC_Os05g14860OsAffx.14699.1.S1_at11/115+8419737..8425022Ubiquitin ligase SINAT3, putative, expressed
LOC_Os05g14860OsAffx.14699.1.S1_s_at11/115+8419737..8425022Ubiquitin ligase SINAT3, putative, expressed
LOC_Os05g14870OsAffx.4340.1.S1_at11/115+8426921..8427440hypothetical protein
LOC_Os05g14880Os.53594.1.S1_at11/115+8429808..8431098expressed protein
LOC_Os05g14890OsAffx.14700.1.S1_at11/115+8434877..8436271hypothetical protein
LOC_Os05g14900OsAffx.26894.1.S1_at11/115+8439795..8441746expressed protein
LOC_Os05g14920OsAffx.14701.1.S1_at11/115+8451292..8451924hypothetical protein
LOC_Os05g14930OsAffx.26896.1.S1_at11/115+8454704..8457403expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53594.1.S1_at--729--2891Chr05:8430348..8430372 (25 bp)
AAGGTGACCATCCTCCGGGTGTTCA
LOC_Os05g14880
Os.53594.1.S1_at--559--7911Chr05:8430258..8430282 (25 bp)
GGATTCCGGTGCTGACCAAGACCAG
LOC_Os05g14880
Os.53594.1.S1_at--801--2771Chr05:8430241..8430265 (25 bp)
AAGACCAGGCCAAGATCTGACTCTC
LOC_Os05g14880
Os.53594.1.S1_at--911--6731Chr05:8430196..8430220 (25 bp)
GTTAATCGGTGGTGTCCCCTGTCAA
LOC_Os05g14880
Os.53594.1.S1_at--340--4211Chr05:8430181..8430205 (25 bp)
CCCCTGTCAATCTCTTCAGTGAATT
LOC_Os05g14880
Os.53594.1.S1_at--3--9591Chr05:8430069..8430093 (25 bp)
TCTTGAATCTTCTCATCTTTGGTAG
LOC_Os05g14880
Os.53594.1.S1_at--353--9551Chr05:8430054..8430078 (25 bp)
TCTTTGGTAGATTTCTGCAGCCTTC
LOC_Os05g14880
Os.53594.1.S1_at--963--9031Chr05:8430039..8430063 (25 bp)
TGCAGCCTTCTTGTTGTAATTTTAA
LOC_Os05g14880
Os.53594.1.S1_at--288--6531Chr05:8430012..8430036 (25 bp)
GATTTTCTAGGTGTTTTCAGAGTCC
LOC_Os05g14880
Os.53594.1.S1_at--326--5671Chr05:8429835..8429859 (25 bp)
GACATTTTTGCATCGGAATCAGTTC
LOC_Os05g14880
Os.53594.1.S1_at--279--5251Chr05:8429820..8429844 (25 bp)
GAATCAGTTCCAGTTAGATGCTTAT
LOC_Os05g14880
Target Sequence 
AAGGTGACCATCCTCCGGGTGTTCACCCACCACGTCGTCGCCGCCAAGGTGTGCCGCATCGGCGTCTCGCCGGCGGACGG
CCGCGTGCTCGGATTCCGGTGCTGACCAAGACCAGGCCAAGATCTGACTCTCCTCCATTTGCCCATTTTGGGGTTAATCG
GTGGTGTCCCCTGTCAATCTCTTCAGTGAATTCGTGTCAAATTTGTAAGATAAGTTAGTTTGATTTGTAACTTAGAATTC
TTCTTCTTTCTGTGATGATTTTCTGAGTGTGTATTTTTCTCTTGAATCTTCTCATCTTTGGTAGATTTCTGCAGCCTTCT
TGTTGTAATTTTAATAGATTTTCTAGGTGTTTTCAGAGTCCAGGCCAAAGAAAGATTTGGTTCTTGAGATGTTCAGTTGG
ACAATTTGTTTTGCTAAGCAACCATAGTGAGGAAATTAAAGCTTATAATTACAATGTATTATCAAAATTATGTTTTGGAC
TTGTAATCTTATCCATTCTTGCAGAATAATTGTGACATTTTTGCATCGGAATCAGTTCCAGTTAGATGCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis