Browse Element(s) Details


Os.53621.1.S1_at

Description gb:AK073621.1
DB_XREF= gi:32983644
TID=Os.53621.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53621 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048E12, full insert sequence.
FL= gb:AK073621.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3151011/11expressed protein
LOC_Os08g413001/1160S ribosomal protein L32, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31470NANA12+18894239..18902927retrotransposon protein, putative, unclassified
LOC_Os12g31480Os.24542.1.S1_at10/1112+18904325..18907546expressed protein
LOC_Os12g31490Os.12422.1.S1_at11/1112+18910313..18915235expressed protein
LOC_Os12g31499NANA12+18920200..18920980NA
LOC_Os12g31510Os.53621.1.S1_at11/1112+18926126..18927207expressed protein
LOC_Os12g31520NANA12+18930822..18931274hypothetical protein
LOC_Os12g31530OsAffx.19915.1.S1_at10/1112+18934665..18936079hAT family dimerisation domain containing protein
LOC_Os12g31530OsAffx.4453.1.S1_at1/1112+18934665..18936079hAT family dimerisation domain containing protein
LOC_Os12g31540OsAffx.31963.1.S1_at11/1112+18938881..18941966expressed protein
LOC_Os12g31550OsAffx.19916.1.S1_at8/1112+18943639..18949263hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53621.1.S1_at--65--10691Chr12:18926638..18926662 (25 bp)
TTCCATGGAGGATCAGGCTGTTCAT
LOC_Os12g31510
Os.53621.1.S1_at--135--3951Chr12:18926715..18926739 (25 bp)
CGGAGGACTTGACCGGAAGCCTATC
LOC_Os12g31510
Os.53621.1.S1_at--1141--2651Chr12:18926731..18926755 (25 bp)
AAGCCTATCGGAGTCTTCGGATTCT
LOC_Os12g31510
Os.53621.1.S1_at--207--9431Chr12:18926747..18926771 (25 bp)
TCGGATTCTCCGGTGAGCGAAGAGT
LOC_Os12g31510
Os.53621.1.S1_at--154--6011Chr12:18926819..18926843 (25 bp)
GAGAGCCTCATTGAGATCTCCCTTG
LOC_Os12g31510
Os.53621.1.S1_at--33--471Chr12:18926834..18926858 (25 bp)
ATCTCCCTTGTTGATGGCCACTATT
LOC_Os12g31510
Os.53621.1.S1_at--249--1232Chr12:18926910..18926934 (25 bp)
AGTTCTTGCCGGATTTGTTGCTTGA
LOC_Os12g31510
Os.53621.1.S1_at--932--3551Chr12:18927013..18927037 (25 bp)
CATCAAGTGCTCAAGCTTTGGCATC
LOC_Os12g31510
Os.53621.1.S1_at--358--9711Chr12:18927076..18927100 (25 bp)
TCAAAATCTTTCTCTGCATTTGCTT
LOC_Os12g31510
Os.53621.1.S1_at--189--6991Chr12:18927137..18927161 (25 bp)
GTACCTGGCCTACATGTTGTGCAAG
LOC_Os12g31510
Os.53621.1.S1_at--403--7351Chr12:18927155..18927179 (25 bp)
GTGCAAGGCTCTTTGTTTTTGGCAA
LOC_Os12g31510
Target Sequence 
TTCCATGGAGGATCAGGCTGTTCATCAAGAGGAGGAGAGCATTATTGTGCCACAAGATGAGGTGGCCGACGATGCACCGG
AGGACTTGACCGGAAGCCTATCGGAGTCTTCGGATTCTCCGGTGAGCGAAGAGTGCACCGAGGAGGGCTCGGTATCCGAT
GACGGTGACGATGATGACGACGAGAGCCTCATTGAGATCTCCCTTGTTGATGGCCACTATTTGGGGCAAGAGAAGAAGAA
ATGTGCATGGAAGGAGCAGGACCTCCTCTCCGAGTTCTTGCCGGATTTGTTGCTTGACAAGAGGGACTTCATGGACATCT
TGTCAGAGATTGGTGAGGAAGACAACCTGATTGAGATTGACATTGCAAGGGGATCCATCAAGTGCTCAAGCTTTGGCATC
AAGGCATGAATCTACCAAAGGTTTGGTGAAGTTCAAAATCAAAATCTTTCTCTGCATTTGCTTCAAAGATTTGATCAGGG
AAAGGGGAGTAGGTTGTATGTACCTGGCCTACATGTTGTGCAAGGCTCTTTGTTTTTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis