Browse Element(s) Details


Os.53654.1.S1_at

Description gb:AK073763.1
DB_XREF= gi:32983786
TID=Os.53654.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068G07, full insert sequence.
FL= gb:AK073763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g044203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04360Os.41695.4.S1_x_at2/117+1929721..1933659Transposable element protein, putative, MuDR
LOC_Os07g04370OsAffx.16079.1.S1_at11/117+1936167..1937694hypothetical protein
LOC_Os07g04380NANA7+1941686..1943505hypothetical protein
LOC_Os07g04390Os.50619.1.S1_at1/117+1944645..1950114hypothetical protein
LOC_Os07g04400OsAffx.5207.1.S1_at11/117+1950488..1951139hypothetical protein
LOC_Os07g04410NANA7+1951766..1952305Cytochrome P450 90D2, putative
LOC_Os07g04420Os.54102.1.S1_x_at9/117+1954422..1957966hypothetical protein
LOC_Os07g04420Os.53654.1.S1_at3/117+1954422..1957966hypothetical protein
LOC_Os07g04420Os.27698.1.A1_x_at1/117+1954422..1957966hypothetical protein
LOC_Os07g04430NANA7+1958813..1962780expressed protein
LOC_Os07g04440Os.49250.1.S1_at8/117+1963593..1964641expressed protein
LOC_Os07g04450Os.16140.1.S1_at10/117+1968074..1970246expressed protein
LOC_Os07g04460NANA7+1972628..1972867hypothetical protein
LOC_Os07g04470OsAffx.16080.1.S1_at10/117+1974591..1975788GRF zinc finger family protein
LOC_Os07g04480Os.49936.1.S1_at11/117+1976356..1979759SWIM zinc finger family protein, expressed
LOC_Os07g04490OsAffx.5209.1.S1_at10/117+1981923..1983107hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53654.1.S1_at--920--8591Chr07:1957743..1957767 (25 bp)
TGGTCACGCACGGAGTCAATGCAAT
LOC_Os07g04420
Os.53654.1.S1_at--414--2811Chr07:1957875..1957898 (24 bp)
AAGATCTTTGGGAGTGGCGACCTGA
LOC_Os07g04420
Os.53654.1.S1_at--322--2331Chr07:1957909..1957933 (25 bp)
AAAGTATTGGCGTCAGTCGATGAGT
LOC_Os07g04420
Os.53654.1.S1_at--540--5351Chr07:1957965..1957989 (25 bp)
GAAGATTCCTCATTGTACTCACAAT
NONE
Os.53654.1.S1_at--570--4271Chr07:1958214..1958238 (25 bp)
CCTGCTGAACCCTAAAGGCCTAAAT
NONE
Os.53654.1.S1_at--585--751Chr07:1958229..1958253 (25 bp)
AGGCCTAAATCCTATATCCAGTTAC
NONE
Os.53654.1.S1_at--1121--10491Chr07:1958254..1958278 (25 bp)
TTAATGTCACTTATTCACTCCGAAG
NONE
Os.53654.1.S1_at--1143--8891Chr07:1958292..1958429 (25 bp)
TGAGAACGCTTGCTCAAGTCAGGAA
NONE
Os.53654.1.S1_at--147--5231Chr07:1958473..1958497 (25 bp)
GAATATACTTTCTGAAGATGCCGAG
NONE
Os.53654.1.S1_at--540--4051Chr07:1958494..1958518 (25 bp)
CGAGGCTTCTCTAAACACAACTACA
NONE
Os.53654.1.S1_at--330--6951Chr07:1958657..1958681 (25 bp)
GTAGATCTAGCTTCATCTTATGACA
NONE
Target Sequence 
TGGTCACGCACGGAGTCAATGCAATGAAGATCTTTGGGAGTGGCGACCTGAAGAAGACTCCAAAGTATTGGCGTCAGTCG
ATGAGTTTGGGCCTTGTTGGTCCAAGATTGCTGGCATGAAGATTCCTCATTGTACTCACAATATGTGCTTGAGAAGATGG
AGAAAGCTGTGTCAAGATAAATTGCCTTCAGTTAAGGCGGCTCAACAAATAAAGAAAGCCATTTTTCAATCCAACTTTTT
GATAGAGAAACAGAGCGACCTGCTGAACCCTAAAGGCCTAAATCCTATATCCAGTTACTTAATGTCACTTATTCACTCCG
AAGTTGATGGAAGTGATGAGAACGCTTGCTCAAGTCAGGAAGCCCCGAAAACATTCTAGAATATACTTTTTTTTTGACGA
GATAGAATATACTTTCTGAAGATGCCGAGGCTTCTCTAAACACAACTACAGCAAATTCAAGGATAAAATCATCTAGAACT
TGTTTTACAGAAGTAGATCTAGCTTCATCTTATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis