Browse Element(s) Details


Os.53662.1.S1_at

Description gb:AK073819.1
DB_XREF= gi:32983842
TID=Os.53662.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53662 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068G20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068G20, full insert sequence.
FL= gb:AK073819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3084011/11RNA pseudouridylate synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30800OsAffx.12295.1.S1_at10/112+18343019..18365090DNA polymerase family B, exonuclease domain containing protein, expressed
LOC_Os02g30810Os.7633.1.S1_at11/112+18365577..18367000Auxin responsive protein, expressed
LOC_Os02g30820OsAffx.28031.1.S1_x_at2/112+18371649..18372751hypothetical protein
LOC_Os02g30830OsAffx.12297.1.S1_at11/112+18374877..18375260hypothetical protein
LOC_Os02g30840Os.53662.1.S1_at11/112+18379408..18384495RNA pseudouridylate synthase family protein, expressed
LOC_Os02g30850OsAffx.26282.1.S1_s_at11/112+18408428..18409451glutaredoxin family protein, putative, expressed
LOC_Os02g30850Os.53592.1.S1_s_at11/112+18408428..18409451glutaredoxin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004730molecular_functionpseudouridylate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53662.1.S1_at--791--8411Chr02:18383678..18383702 (25 bp)
GGCCTTTAAACTTACTGCACTATCT
LOC_Os02g30840
Os.53662.1.S1_at--352--8151Chr02:18383713..18383737 (25 bp)
GGAAATCTTAATCCTGCTAGAGCTT
LOC_Os02g30840
Os.53662.1.S1_at--581--3351Chr02:18383769..18383793 (25 bp)
CACGCAAACTGTTGAGTGCCTCTTT
LOC_Os02g30840
Os.53662.1.S1_at--1130--10411Chr02:18383792..18383816 (25 bp)
TTATTTAGTCATAGCTCCCTTGTCC
LOC_Os02g30840
Os.53662.1.S1_at--247--9151Chr02:18383838..18383862 (25 bp)
TGCCCAATCCGTTACTTCCAAAATA
LOC_Os02g30840
Os.53662.1.S1_at--608--3871Chr02:18383880..18383904 (25 bp)
CTGTTCACCATAGCATGTCTCTGAT
LOC_Os02g30840
Os.53662.1.S1_at--443--10391Chr02:18383932..18383956 (25 bp)
TTTTCTGCTGATTCTTTGTGCCAAT
LOC_Os02g30840
Os.53662.1.S1_at--1075--10811Chr02:18383947..18383971 (25 bp)
TTGTGCCAATAGTATGCCCTCTTGT
LOC_Os02g30840
Os.53662.1.S1_at--172--8931Chr02:18384080..18384104 (25 bp)
TGACGAGGTGTACCTTTCCGAGAAT
LOC_Os02g30840
Os.53662.1.S1_at--490--5951Chr02:18384099..18384123 (25 bp)
GAGAATTTTTCTCCACGTTCGTCAA
LOC_Os02g30840
Os.53662.1.S1_at--560--1311Chr02:18384141..18384165 (25 bp)
AGAGCAACCACGCTAGCTTGTTCAT
LOC_Os02g30840
Target Sequence 
GGCCTTTAAACTTACTGCACTATCTGAATCATAATGGAAATCTTAATCCTGCTAGAGCTTGGCAAAATGCATTTTAGGTG
CACACAGGTGACACGCAAACTGTTGAGTGCCTCTTTATTTAGTCATAGCTCCCTTGTCCCTGTTTTGATAACATGCTTCA
TGCCCAATCCGTTACTTCCAAAATAATCAAATTATCAGACATCTGTTCACCATAGCATGTCTCTGATGCAAGATGAGATA
GATGTGGTCATAATTTTTCTGCTGATTCTTTGTGCCAATAGTATGCCCTCTTGTCCTATGGTTTTGTTTTTTCAGTTACT
TATCTATATTTCTGATACAGCTTTTTGTTTGACAAATGTAGATAAGGGTACATCTAAAACACATTGGTTACCCAATAGCC
AATGACGAGGTGTACCTTTCCGAGAATTTTTCTCCACGTTCGTCAAAGGGAACAAGAATCAACAGAGCAACCACGCTAGC
TTGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis