Browse Element(s) Details


Os.53667.1.S1_at

Description gb:AK073833.1
DB_XREF= gi:32983856
TID=Os.53667.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068K09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068K09, full insert sequence.
FL= gb:AK073833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3548011/11Cationic peroxidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35440Os.10703.2.S1_x_at1/116+20650015..20653835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35440Os.51348.1.S1_x_at1/116+20650015..20653835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35450NANA6+20654817..20657113hypothetical protein
LOC_Os06g35460Os.51348.1.S1_x_at1/116+20660170..20664084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35470Os.16649.1.S1_at2/116+20665507..20671621ribosomal protein L1 containing protein, expressed
LOC_Os06g35480Os.53667.1.S1_at11/116+20675209..20676669Cationic peroxidase 1 precursor, putative, expressed
LOC_Os06g35490OsAffx.27950.1.S1_at10/116+20687531..20690748Peroxidase 52 precursor, putative
LOC_Os06g35500NANA6+20698118..20698444hypothetical protein
LOC_Os06g35510NANA6+20701536..20702393transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53667.1.S1_at--713--4451Chr06:20675621..20675645 (25 bp)
GCCTACTACGCGAACCTGGTGAAGA
LOC_Os06g35480
Os.53667.1.S1_at--237--5791Chr06:20675442..20675466 (25 bp)
GACCGAGGTCCGTCTGAACTGTAGG
LOC_Os06g35480
Os.53667.1.S1_at--452--9291Chr06:20675434..20675458 (25 bp)
TCCGTCTGAACTGTAGGAAGGTCAA
LOC_Os06g35480
Os.53667.1.S1_at--631--8731Chr06:20675423..20675447 (25 bp)
TGTAGGAAGGTCAACTAAAGTCAAC
LOC_Os06g35480
Os.53667.1.S1_at--1017--9711Chr06:20675403..20675427 (25 bp)
TCAACCTGATGACGAACGTGTCCAA
LOC_Os06g35480
Os.53667.1.S1_at--316--1911Chr06:20675388..20675412 (25 bp)
ACGTGTCCAAGAACTACAAGTGTAG
LOC_Os06g35480
Os.53667.1.S1_at--483--9851Chr06:20675374..20675398 (25 bp)
TACAAGTGTAGTGAACAGTCAAGAT
LOC_Os06g35480
Os.53667.1.S1_at--4--7051Chr06:20675272..20675296 (25 bp)
GTAAACATCTTTTGATAGCTGCCAG
LOC_Os06g35480
Os.53667.1.S1_at--883--3551Chr06:20675267..20675291 (25 bp)
CATCTTTTGATAGCTGCCAGTCAGT
LOC_Os06g35480
Os.53667.1.S1_at--35--4791Chr06:20675255..20675279 (25 bp)
GCTGCCAGTCAGTCAATGATCATCT
LOC_Os06g35480
Os.53667.1.S1_at--1039--7071Chr06:20675244..20675268 (25 bp)
GTCAATGATCATCTGTAAGCATAAA
LOC_Os06g35480
Target Sequence 
GCCTACTACGCGAACCTGGTGAAGAAGCAGGGGCTGTTCCACTCCGACCAGGAGCTGTTCAACGGCGGGTCGCAGGACGC
GCTGGTGAGGAAGTACGCCGGCAACGCCGGCATGTTCGCCGCCGACTTCGCCAAGGCGATGGTGAGGATGGGCGCCCTCC
TGCCGGCGGCCGGGACGCCGACCGAGGTCCGTCTGAACTGTAGGAAGGTCAACTAAAGTCAACCTGATGACGAACGTGTC
CAAGAACTACAAGTGTAGTGAACAGTCAAGATGGNTGTTTCTGNCTCCTTTGGATTTNATTTTTGTGATCTGGTTAATAT
TTTTATTATTTGTGGAATTAATAATGTTGCTGTAAACATCTTTTGATAGCTGCCAGTCAGTCAATGATCATCTGTAAGCA
TAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis