Browse Element(s) Details


Os.53749.1.S1_at

Description gb:AK099684.1
DB_XREF= gi:32984893
TID=Os.53749.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072A20, full insert sequence.
FL= gb:AK099684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g322109/11Autophagocytosis associated protein, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32180Os.49374.1.S1_at11/1112+19396282..19399917Cornichon protein, expressed
LOC_Os12g32190Os.50052.2.S1_at10/1112+19400549..19402236expressed protein
LOC_Os12g32200OsAffx.31974.1.S1_at10/1112+19405991..19409288expressed protein
LOC_Os12g32210Os.53749.1.S1_at9/1112+19412646..19414959Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os12g32219NANA12+19421573..19422150NA
LOC_Os12g32230Os.26913.1.S1_at10/1112+19423639..19428120Molybdenum cofactor biosynthesis protein 1 A, putative, expressed
LOC_Os12g32240Os.10978.1.S1_at11/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32240Os.57450.1.S1_x_at9/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53749.1.S1_at--32--3791Chr12:19413916..19414030 (25 bp)
CTCGGGAGTTGAACTGTGCTTGCAC
LOC_Os12g32210
Os.53749.1.S1_at--308--7351Chr12:19414142..19414166 (25 bp)
GTGCAATACTTACCGGCATGGCTAT
LOC_Os12g32210
Os.53749.1.S1_at--480--5711Chr12:19414188..19414212 (25 bp)
GACTGAAAATCCCACTTGAGCTTTA
LOC_Os12g32210
Os.53749.1.S1_at--881--8911Chr12:19414204..19414669 (25 bp)
TGAGCTTTATGCTTCTGGACTGAAA
LOC_Os12g32210
Os.53749.1.S1_at--532--6951Chr12:19414678..19414702 (25 bp)
GTAGCAATTGCTTGCCAATTTGCCA
LOC_Os12g32210
Os.53749.1.S1_at--76--231Chr12:19414702..19414726 (25 bp)
ATTTGGCTCTTGCAAGTTCGTCAGC
LOC_Os12g32210
Os.53749.1.S1_at--196--10211Chr12:19414735..19414759 (25 bp)
TATTTTGCGCAAATGCCAATGCTTA
LOC_Os12g32210
Os.53749.1.S1_at--814--6451Chr12:19414761..19414781 (21 bp)
GATCAAACTGTACTGCATCTGAGAT
LOC_Os12g32210
Os.53749.1.S1_at--762--4971Chr12:19414775..19414914 (25 bp)
GCATCTGAGATGCATCATGTCTCCT
LOC_Os12g32210
Os.53749.1.S1_at--600--5351Chr12:19414958..19414982 (25 bp)
GAAGATCATCAACTGGCCTACTAAT
NONE
Os.53749.1.S1_at--400--1951Chr12:19414969..19414993 (25 bp)
ACTGGCCTACTAATCTTTGTTCTTA
NONE
Target Sequence 
CTCGGGAGTTGAACTGTGCTTGCACCCCCTGCAGGAGCATCCCCATTTTAGTAGGCCATGGTTCACTTTGCATCCCTGTG
GAACCAGTGACTGTATGAAGTTACTTCTTGAAGGAGTGGAAAACAAGGATCAACATGTGCAATACTTACCGGCATGGCTA
TCTGTGGTTGGCCAGGCAGTAGGACTGAAAATCCCACTTGAGCTTTATGCTTCTGGACTGAAAACACAGGAGTAGCAATT
GCTTGCCAATTTGCCATTTGGCTCTTGCAAGTTCGTCAGCAACATATCTATTTTGCGCAAATGCCAATGCTTATGATCAA
ACTGTACTGCATCTGAGATGCATCATGTCTCCTGGAAACCTGGAAACAACTGAGGATCAACTTCCTAGAAGTAACTGAAG
ATCATCAACTGGCCTACTAATCTTTGTTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis