Browse Element(s) Details


Os.53754.2.S1_x_at

Description gb:AK106793.1
DB_XREF= gi:32992002
TID=Os.53754.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-A11, full insert sequence.
FL= gb:AK106793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4423011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44190OsAffx.6132.1.S1_s_at11/118+27685413..27686119Zinc finger, C2H2 type family protein, expressed
LOC_Os08g44200Os.5001.1.S1_at11/118+27692190..27697450YT521-B-like family protein, expressed
LOC_Os08g44210Os.11002.1.S1_at11/118+27700148..27701289Dihydroneopterin aldolase, putative, expressed
LOC_Os08g44220Os.54453.1.S1_at10/118+27701741..27705263expressed protein
LOC_Os08g44220Os.50429.1.S1_at1/118+27701741..27705263expressed protein
LOC_Os08g44230Os.53754.2.S1_x_at11/118+27709586..27714790DHHC zinc finger domain containing protein, expressed
LOC_Os08g44240Os.26966.1.A1_at11/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44240Os.56976.1.S1_at1/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44250Os.12763.3.S1_at11/118+27723997..27725670Fb14, putative, expressed
LOC_Os08g44260Os.18764.1.S1_at11/118+27726154..27735474myotubularin related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53754.2.S1_x_at--861--8891Chr08:27714150..27714174 (25 bp)
TGAGTGCCGCCCGTAGCCGCAATAA
LOC_Os08g44230
Os.53754.2.S1_x_at--971--6011Chr08:27714233..27714257 (25 bp)
GAGAGGCTGACGTACTCCGGCCAGT
LOC_Os08g44230
Os.53754.2.S1_x_at--138--3931Chr08:27714250..27714274 (25 bp)
CGGCCAGTCGATATTCTTCGGCGGG
LOC_Os08g44230
Os.53754.2.S1_x_at--712--6851Chr08:27714364..27714388 (25 bp)
GTTTGCTCCCGGAACATTCCAGAAG
LOC_Os08g44230
Os.53754.2.S1_x_at--373--1791Chr08:27714397..27714421 (25 bp)
ACCGTTCCGTAGGTGAAATCTGCAA
LOC_Os08g44230
Os.53754.2.S1_x_at--543--5591Chr08:27714411..27714435 (25 bp)
GAAATCTGCAACTGATGACCGGCAA
LOC_Os08g44230
Os.53754.2.S1_x_at--460--691Chr08:27714425..27714449 (25 bp)
ATGACCGGCAATGGCGATATCATCG
LOC_Os08g44230
Os.53754.2.S1_x_at--413--411Chr08:27714443..27714467 (25 bp)
ATCATCGCCGGACAATGCTAATCTC
LOC_Os08g44230
Os.53754.2.S1_x_at--912--9751Chr08:27714461..27714485 (25 bp)
TAATCTCCGGCGAGGTGACACTGGA
LOC_Os08g44230
Os.53754.2.S1_x_at--120--9891Chr08:27714589..27714613 (25 bp)
TACATAACCTTGTCTGATTCAGGAA
LOC_Os08g44230
Os.53754.2.S1_x_at--303--7031Chr08:27714666..27714690 (25 bp)
GTACAGCATTCTTTTCTCGGTAATT
LOC_Os08g44230
Target Sequence 
TGAGTGCCGCCCGTAGCCGCAATAATCCCGCCGCGCCCGCGCCCACGAACGCCGCCCCTTCGTCGTCGTCGACGCTGCCG
TCGGAGAGGCTGACGTACTCCGGCCAGTCGATATTCTTCGGCGGGCCACTGCTGGGCGGCGCCGCCGCCGCCGGCGAACC
TCGAAGGGACGAGGCGGCGGGGACGAGGGCCCGCGGCGGCGAGTCCTTCCCGGTGTTTGCTCCCGGAACATTCCAGAAGA
AGCCGCCACCGTTCCGTAGGTGAAATCTGCAACTGATGACCGGCAATGGCGATATCATCGCCGGACAATGCTAATCTCCG
GCGAGGTGACACTGGAAGCAGAATCTGCAAGAACAAGTGATCAGCATATGCTGTCGAAGCATTAAAAGGAAGGAAGATTA
ATTAATGTGGAGTTTTACATCTGATGAAGTGAAGATAATTACATAACCTTGTCTGATTCAGGAAGAGAGAGAAATCGGGA
GCAAAGAGATGTGGTGGGAGCAAAGAGTTTTGCCATGTACAGCATTCTTTTCTCGGTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53754.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis