Browse Element(s) Details


Os.5001.1.S1_at

Description gb:AK068463.1
DB_XREF= gi:32978481
TID=Os.5001.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.5001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153A10, full insert sequence.
FL= gb:AK068463.1 gb:AK104837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4420011/11YT521-B-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44160OsAffx.29657.1.S1_at11/118+27664727..27669909hypothetical protein
LOC_Os08g44160Os.54371.1.S1_x_at1/118+27664727..27669909hypothetical protein
LOC_Os08g44170OsAffx.17512.1.S1_at11/118+27670191..27677162transposon protein, putative, unclassified
LOC_Os08g44180OsAffx.6131.1.S1_at11/118+27678174..27681514expressed protein
LOC_Os08g44180Os.15204.1.S1_at1/118+27678174..27681514expressed protein
LOC_Os08g44190OsAffx.6132.1.S1_s_at11/118+27685413..27686119Zinc finger, C2H2 type family protein, expressed
LOC_Os08g44200Os.5001.1.S1_at11/118+27692190..27697450YT521-B-like family protein, expressed
LOC_Os08g44210Os.11002.1.S1_at11/118+27700148..27701289Dihydroneopterin aldolase, putative, expressed
LOC_Os08g44220Os.54453.1.S1_at10/118+27701741..27705263expressed protein
LOC_Os08g44220Os.50429.1.S1_at1/118+27701741..27705263expressed protein
LOC_Os08g44230Os.53754.2.S1_x_at11/118+27709586..27714790DHHC zinc finger domain containing protein, expressed
LOC_Os08g44240Os.26966.1.A1_at11/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44240Os.56976.1.S1_at1/118+27716200..27723382peroxisome biogenesis protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5001.1.S1_at--140--5291Chr08:27692739..27692763 (25 bp)
GAATGTGAGCCCTAATTCAGCTGAC
LOC_Os08g44200
Os.5001.1.S1_at--702--7671Chr08:27692701..27692725 (25 bp)
GGGATTCATCTGTCGCTGCAAAGCC
LOC_Os08g44200
Os.5001.1.S1_at--373--2671Chr08:27692646..27692670 (25 bp)
AAGCCCCAGGGTGATTGGTTCATAC
LOC_Os08g44200
Os.5001.1.S1_at--763--5511Chr08:27692620..27692644 (25 bp)
GAAAATTCTCTGATCCATGCTCTTC
LOC_Os08g44200
Os.5001.1.S1_at--878--571Chr08:27692608..27692632 (25 bp)
ATCCATGCTCTTCCTCTTTGAAATA
LOC_Os08g44200
Os.5001.1.S1_at--977--8651Chr08:27692575..27692599 (25 bp)
TGGGCGAAGACAATGTCCAGCGCTT
LOC_Os08g44200
Os.5001.1.S1_at--1113--5891Chr08:27692393..27692417 (25 bp)
GAGCTGCAGTTTTTGTGCAAGCCTC
LOC_Os08g44200
Os.5001.1.S1_at--949--9011Chr08:27692378..27692402 (25 bp)
TGCAAGCCTCTGTAAATTTCCCAGT
LOC_Os08g44200
Os.5001.1.S1_at--1112--191Chr08:27692363..27692387 (25 bp)
ATTTCCCAGTTCAATCGATCTCAAG
LOC_Os08g44200
Os.5001.1.S1_at--589--6291Chr08:27692339..27692363 (25 bp)
GATGAATAAGGCCTTTTGCCTCCTC
LOC_Os08g44200
Os.5001.1.S1_at--314--1091Chr08:27692194..27692218 (25 bp)
AGTGTGACCTTGTGGTGGTCGCTTA
LOC_Os08g44200
Target Sequence 
GAATGTGAGCCCTAATTCAGCTGACAAAGGTGCCAGTGGGGATTCATCTGTCGCTGCAAAGCCTTTGGAAGTTAAAGAGG
CCGGCTTAGCATAAAGCCCCAGGGTGATTGGTTCATACTGAAAATTCTCTGATCCATGCTCTTCCTCTTTGAAATACTAA
GAAATGGGCGAAGACAATGTCCAGCGCTTCTGTCTGGTGAAGCATTGTACACTAGGATAGGATGGAAGCCTAGCTCCTTN
AATAGTTTCTTTTTTTACCTTTCTTNTTGTTCCTTATCTTTTCCTGTTGGTAATATTTTTCGTTGCGTTTATATGATGAT
CGATTCCTTAGTGGCTAGCCTTAAGGAGAGCTGCAGTTTTTGTGCAAGCCTCTGTAAATTTCCCAGTTCAATCGATCTCA
AGATGAATAAGGCCTTTTGCCTCCTCCAGTAAAATCCTCTTTAATCTACTTGTCTTATACTGAACNAGGTGTGTCTGGAA
AACAACATAACATCTGTTTGGGTGACCTGGTGATGGTAACAATAACAACTTGTTAATAATAAAGAGAGTGTGACCTTGTG
GTGGTCGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis