Browse Element(s) Details


Os.54453.1.S1_at

Description gb:AK105201.1
DB_XREF= gi:32990410
TID=Os.54453.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-C04, full insert sequence.
FL= gb:AK105201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4422010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44170OsAffx.17512.1.S1_at11/118+27670191..27677162transposon protein, putative, unclassified
LOC_Os08g44180OsAffx.6131.1.S1_at11/118+27678174..27681514expressed protein
LOC_Os08g44180Os.15204.1.S1_at1/118+27678174..27681514expressed protein
LOC_Os08g44190OsAffx.6132.1.S1_s_at11/118+27685413..27686119Zinc finger, C2H2 type family protein, expressed
LOC_Os08g44200Os.5001.1.S1_at11/118+27692190..27697450YT521-B-like family protein, expressed
LOC_Os08g44210Os.11002.1.S1_at11/118+27700148..27701289Dihydroneopterin aldolase, putative, expressed
LOC_Os08g44220Os.54453.1.S1_at10/118+27701741..27705263expressed protein
LOC_Os08g44220Os.50429.1.S1_at1/118+27701741..27705263expressed protein
LOC_Os08g44230Os.53754.2.S1_x_at11/118+27709586..27714790DHHC zinc finger domain containing protein, expressed
LOC_Os08g44240Os.26966.1.A1_at11/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44240Os.56976.1.S1_at1/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44250Os.12763.3.S1_at11/118+27723997..27725670Fb14, putative, expressed
LOC_Os08g44260Os.18764.1.S1_at11/118+27726154..27735474myotubularin related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0010175molecular_functionsphingosine transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54453.1.S1_at--957--7071Chr08:27704694..27704718 (25 bp)
GTCAAGTCCATTTCCGACTTCTTCG
LOC_Os08g44220
Os.54453.1.S1_at--141--1391Chr08:27701989..27702008 (20 bp)
AGACCGATGAATCTGCGGCTGCAGA
LOC_Os08g44220
Os.54453.1.S1_at--1141--1911Chr08:27701938..27701962 (25 bp)
ACGGGATCATCAGCTACATCGACGA
LOC_Os08g44220
Os.54453.1.S1_at--166--531Chr08:27701921..27701945 (25 bp)
ATCGACGAGCTATTCGCCTCCAGAG
LOC_Os08g44220
Os.54453.1.S1_at--253--1651Chr08:27701891..27701915 (25 bp)
AGCGCGGATTTCTGAAGTCTGTCAT
LOC_Os08g44220
Os.54453.1.S1_at--753--7131Chr08:27701871..27701895 (25 bp)
GTCATTCACACATCATGCAACAGGG
LOC_Os08g44220
Os.54453.1.S1_at--89--7671Chr08:27701849..27701873 (25 bp)
GGGATGCTTAATTATCTGCAGACTA
LOC_Os08g44220
Os.54453.1.S1_at--1096--3411Chr08:27701831..27701855 (25 bp)
CAGACTATGCGAACGGTGGTCAATA
LOC_Os08g44220
Os.54453.1.S1_at--1040--10171Chr08:27701783..27701807 (25 bp)
TATACTCTGCCTATGGTCTTCTGGA
LOC_Os08g44220
Os.54453.1.S1_at--478--7811Chr08:27701769..27701793 (25 bp)
GGTCTTCTGGACCTACAGTATATAT
LOC_Os08g44220
Os.54453.1.S1_at--911--7031Chr08:27701741..27701765 (25 bp)
GTACAACATGGTGTTTTTCCTCTTC
NONE
Target Sequence 
GTCAAGTCCATTTCCGACTTCTTCGCCACCATCAATGAGACCGATGAATCTGCGGCTGCAGAGATGCAAAAGTACATCGA
TGCAGCCNACGGGATCATCAGCTACATCGACGAGCTATTCGCCTCCAGAGGCGTCAGCGCGGATTTCTGAAGTCTGTCAT
TCACACATCATGCAACAGGGATGCTTAATTATCTGCAGACTATGCGAACGGTGGTCAATAATAATGTAGTATTAATATTT
ACTTATACTCTGCCTATGGTCTTCTGGACCTACAGTATATATGCAGTACAACATGGTGTTTTTCCTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis