Browse Element(s) Details


OsAffx.17512.1.S1_at

Description tigr:9636.m04501
TID=OsAffx.17512.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4417011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44110OsAffx.29654.1.S1_at9/118+27642878..27646500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g44124OsAffx.30340.1.S1_x_at2/118+27649285..27653530retrotransposon protein, putative, unclassified
LOC_Os08g44140Os.10947.1.S1_at7/118+27657462..27661313Transmembrane 9 superfamily protein member 2 precursor, putative, expressed
LOC_Os08g44150OsAffx.29656.1.S1_at11/118+27661488..27664495Endomembrane protein 70 containing protein, expressed
LOC_Os08g44160OsAffx.29657.1.S1_at11/118+27664727..27669909hypothetical protein
LOC_Os08g44160Os.54371.1.S1_x_at1/118+27664727..27669909hypothetical protein
LOC_Os08g44170OsAffx.17512.1.S1_at11/118+27670191..27677162transposon protein, putative, unclassified
LOC_Os08g44180OsAffx.6131.1.S1_at11/118+27678174..27681514expressed protein
LOC_Os08g44180Os.15204.1.S1_at1/118+27678174..27681514expressed protein
LOC_Os08g44190OsAffx.6132.1.S1_s_at11/118+27685413..27686119Zinc finger, C2H2 type family protein, expressed
LOC_Os08g44200Os.5001.1.S1_at11/118+27692190..27697450YT521-B-like family protein, expressed
LOC_Os08g44210Os.11002.1.S1_at11/118+27700148..27701289Dihydroneopterin aldolase, putative, expressed
LOC_Os08g44220Os.54453.1.S1_at10/118+27701741..27705263expressed protein
LOC_Os08g44220Os.50429.1.S1_at1/118+27701741..27705263expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17512.1.S1_at--328--5091Chr08:27675554..27675578 (25 bp)
GCACCCAAAGGTCGAGATCATCCAT
LOC_Os08g44170
OsAffx.17512.1.S1_at--805--6431Chr08:27675569..27675593 (25 bp)
GATCATCCATGAGCAGTTCAACATT
LOC_Os08g44170
OsAffx.17512.1.S1_at--603--5071Chr08:27676145..27676169 (25 bp)
GCACCTCCAACATCCAAGTGGTTAA
LOC_Os08g44170
OsAffx.17512.1.S1_at--627--291Chr08:27676256..27676280 (25 bp)
ATAGACGCATACATTGAGCTCATCA
LOC_Os08g44170
OsAffx.17512.1.S1_at--749--5951Chr08:27676286..27676310 (25 bp)
GAGCAAGCCGACACACCAAGAGGAA
LOC_Os08g44170
OsAffx.17512.1.S1_at--576--5251Chr08:27676328..27676352 (25 bp)
GAATCTGAAGCACATTGCCAGCAAT
LOC_Os08g44170
OsAffx.17512.1.S1_at--1077--5351Chr08:27676404..27676428 (25 bp)
GAAGAGCCACAGTTGCATCCAAATA
LOC_Os08g44170
OsAffx.17512.1.S1_at--496--8831Chr08:27676438..27676537 (25 bp)
TGATATGATCTTCCTACCGCTAAAT
LOC_Os08g44170
OsAffx.17512.1.S1_at--970--2571Chr08:27676649..27677046 (25 bp)
AACGATACGGACACATGCACTACAT
LOC_Os08g44170
OsAffx.17512.1.S1_at--628--10331Chr08:27677046..27677070 (25 bp)
TTTAGAGCGAAGCTGGCATCCACCC
LOC_Os08g44170
OsAffx.17512.1.S1_at--184--1811Chr08:27677067..27677091 (25 bp)
ACCCTAATCAACTCTTCCATGAATG
LOC_Os08g44170
Target Sequence 
GCACCCAAAGGTCGAGATCATCCATGAGCAGTTCAACATTACAAATCAAGAGGAATTTCTTAGAGCACTTGTTGTCCCTC
AAGAAGCACCTCCAACATCCAAGTGGTTAAATGGCAGTATCATAGACGCATACATTGAGCTCATCAAAGACGAGCAAGCC
GACACACCAAGAGGAAATGGGATGGCATTACTAGAATCTGAAGCACATTGCCAGCAATGGAAATCTGATGGTGCAAAAAA
AGGAACTTTCAGCAAAACATACCGTCAAAGAAGAGCCACAGTTGCATCCAAATACCTCAACCATGATATGATCTTCCTAC
CGCTAAATAGAAATAAGGACCACTGGTATGTTGTTGTACTCAATGCTGGAAAACAAAAAATACAGATACTAGACTCAATA
CGTATGGATAGGAACACATATGAGGCTAACAAAGACCTCAACGATACGGACACATGCACTACATTTAGAGCGAAGCTGGC
ATCCACCCTAATCAACTCTTCCATGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis