Browse Element(s) Details


Os.10947.1.S1_at

Description gb:AK072840.1
DB_XREF= gi:32982863
TID=Os.10947.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141D24, full insert sequence.
FL= gb:AK058785.1 gb:AK072840.1 gb:AK099230.1 gb:AK105089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4409011/11Endomembrane protein 70 containing protein, expressed
LOC_Os08g4410011/11Endomembrane protein 70 containing protein, expressed
LOC_Os08g441407/11Transmembrane 9 superfamily protein member 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44050Os.21255.1.S1_x_at11/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.21255.3.S1_x_at2/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.2.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.3.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44060OsAffx.29654.1.S1_at11/118+27609700..27609912hypothetical protein
LOC_Os08g44070OsAffx.17511.1.S1_at11/118+27623463..27623981expressed protein
LOC_Os08g44080OsAffx.29655.1.S1_at11/118+27626739..27627500hypothetical protein
LOC_Os08g44090Os.10947.1.S1_at11/118+27629093..27633020Endomembrane protein 70 containing protein, expressed
LOC_Os08g44100Os.10947.1.S1_at11/118+27638205..27641953Endomembrane protein 70 containing protein, expressed
LOC_Os08g44110OsAffx.29654.1.S1_at9/118+27642878..27646500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g44124OsAffx.30340.1.S1_x_at2/118+27649285..27653530retrotransposon protein, putative, unclassified
LOC_Os08g44140Os.10947.1.S1_at7/118+27657462..27661313Transmembrane 9 superfamily protein member 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10947.1.S1_at--1078--7472Chr08:27641420..27641444 (25 bp)
GTGGTGGAGGTCCTATCTTACTTCA
LOC_Os08g44100
Os.10947.1.S1_at--472--7792Chr08:27641428..27641452 (25 bp)
GGTCCTATCTTACTTCAGGATCATC
LOC_Os08g44100
Os.10947.1.S1_at--423--9553Chr08:27660816..27660840 (25 bp)
TCTATCTCTTCCTGTATGCTGGGTT
LOC_Os08g44140
Os.10947.1.S1_at--917--8752Chr08:27641470..27641494 (25 bp)
TGTATGCTGGGTTCTACTTCTTCAC
LOC_Os08g44100
Os.10947.1.S1_at--797--2013Chr08:27660866..27660890 (25 bp)
ACTAAACTGGTGTCAGGCATTCTGT
LOC_Os08g44140
Os.10947.1.S1_at--701--10613Chr08:27660893..27660917 (25 bp)
TTCGGCTACATGCTTCTGGCCTCAT
LOC_Os08g44140
Os.10947.1.S1_at--1118--2233Chr08:27660941..27660965 (25 bp)
ACAATTGGTTTCTGTGCCTGCTTGT
LOC_Os08g44140
Os.10947.1.S1_at--833--4473Chr08:27660956..27660980 (25 bp)
GCCTGCTTGTGGTTCACGAGATTGA
LOC_Os08g44140
Os.10947.1.S1_at--734--5033Chr08:27661009..27661033 (25 bp)
GCAGAGTTGCTATACATCCGGCTTC
LOC_Os08g44140
Os.10947.1.S1_at--119--8693Chr08:27661064..27661088 (25 bp)
TGTGAGACGAGGATCAGAATCCACT
LOC_Os08g44140
Os.10947.1.S1_at--759--9592Chr08:27641863..27641887 (25 bp)
TCATATGGCAGAGCATATTTCTCAA
LOC_Os08g44100
Target Sequence 
GTGGTGGAGGTCCTATCTTACTTCAGGATCATCTGCCATCTATCTCTTCCTGTATGCTGGGTTCTACTTCTTCACCAAGC
TGCAGATTACTAAACTGGTGTCAGGCATTCTGTNCTTCGGCTACATGCTTCTGGCCTCATTCTCTTTCTTCGTGCTNACT
GGCACAATTGGTTTCTGTGCCTGCTTGTGGTTCACGAGATTGATTTACTCATCTGTGAAGATTGANTAGGCGCAGAGTTG
CTATACATCCGGCTTCCAANAGTTCTGTATGATTATTGTGGAGAATTGTGAGACGAGGATCAGAATCCACTNTGTATTTT
NCCGATTTTCNAGAAAATTTATATCGTAGTTCTTAGTTTATAAACCACTNATGTTCATTCACTATAAATGAGATGATACA
TCTTTGATATGAGGTTATATAAGGCTNAATTACGATTGTTAATTTCATATGGCAGAGCATATTTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis