Browse Element(s) Details


OsAffx.29655.1.S1_at

Description tigr:9636.m04492
TID=OsAffx.29655.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4408011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44050Os.21255.1.S1_x_at11/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.21255.3.S1_x_at2/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.2.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.3.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44060OsAffx.29654.1.S1_at11/118+27609700..27609912hypothetical protein
LOC_Os08g44070OsAffx.17511.1.S1_at11/118+27623463..27623981expressed protein
LOC_Os08g44080OsAffx.29655.1.S1_at11/118+27626739..27627500hypothetical protein
LOC_Os08g44090Os.10947.1.S1_at11/118+27629093..27633020Endomembrane protein 70 containing protein, expressed
LOC_Os08g44100Os.10947.1.S1_at11/118+27638205..27641953Endomembrane protein 70 containing protein, expressed
LOC_Os08g44110OsAffx.29654.1.S1_at9/118+27642878..27646500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g44124OsAffx.30340.1.S1_x_at2/118+27649285..27653530retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29655.1.S1_at--13--5391Chr08:27626792..27626816 (25 bp)
GAAGAAGACCACCTGCATGACGACG
LOC_Os08g44080
OsAffx.29655.1.S1_at--991--1371Chr08:27626797..27626821 (25 bp)
AGACCACCTGCATGACGACGCGGAG
LOC_Os08g44080
OsAffx.29655.1.S1_at--1120--10853Chr08:27626862..27626886 (25 bp)
TTGGACAGCTTCTTCACGTCCATCA
LOC_Os08g44080
OsAffx.29655.1.S1_at--1141--10553Chr08:27626871..27626895 (25 bp)
TTCTTCACGTCCATCAAGCTTGAGA
LOC_Os08g44080
OsAffx.29655.1.S1_at--634--2711Chr08:27626886..27626910 (25 bp)
AAGCTTGAGATCTTCCGATCCTCTT
LOC_Os08g44080
OsAffx.29655.1.S1_at--647--4431Chr08:27626915..27626939 (25 bp)
GCCTTCGGCACGTTCGGATGCAACT
LOC_Os08g44080
OsAffx.29655.1.S1_at--361--371Chr08:27627149..27627173 (25 bp)
ATCAATGTCGGTGTACAGTCCATCA
LOC_Os08g44080
OsAffx.29655.1.S1_at--1--1152Chr08:27627165..27627189 (25 bp)
AGTCCATCATGGGTTGCTCTTGCTG
LOC_Os08g44080
OsAffx.29655.1.S1_at--656--10711Chr08:27627178..27627202 (25 bp)
TTGCTCTTGCTGCATCACGCAAGGA
LOC_Os08g44080
OsAffx.29655.1.S1_at--53--3851Chr08:27627187..27627211 (25 bp)
CTGCATCACGCAAGGAGGTCGGAGA
LOC_Os08g44080
OsAffx.29655.1.S1_at--838--7551Chr08:27627356..27627380 (25 bp)
GGGCCAACCATTTGTTCCTCTTCTT
LOC_Os08g44080
Target Sequence 
GAAGAAGACCACCTGCATGACGACGCGGAGCGGGAGGCGATTGTTCTGCGCCGCGTGGATGCACGCCTCCTTGGACAGCT
TCTTCACGTCCATCAAGCTTGAGATCTTCCGATCCTCTTCTCCGCCTTCGGCACGTTCGGATGCAACTGACAACAAATAT
ACCTTGAGAAAGACATCAATGTCGGTGTACAGTCCATCATGGGTTGCTCTTGCTGCATCACGCAAGGAGGTCGGAGAGGA
AGACAGCGACGCCCGCGGGGGAGTAGAGGAGGGAGCGGAGGAGGTCGCGGAGGTGCGGGAGCGTGCGGCGGACGACGATG
AGGATGCGGGCGCTGCGCGTGGACACCACGCTCGCCGGCTTCGACGGCCTCCGCATCCGCCGGGCCAACCATTTGTTCCT
CTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis