Browse Element(s) Details


OsAffx.17511.1.S1_at

Description tigr:9636.m04491
TID=OsAffx.17511.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4407011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44050Os.21255.1.S1_x_at11/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.21255.3.S1_x_at2/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.2.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44050Os.19512.3.S1_x_at1/118+27600540..27606828INDETERMINATE-related protein 1, putative, expressed
LOC_Os08g44060OsAffx.29654.1.S1_at11/118+27609700..27609912hypothetical protein
LOC_Os08g44070OsAffx.17511.1.S1_at11/118+27623463..27623981expressed protein
LOC_Os08g44080OsAffx.29655.1.S1_at11/118+27626739..27627500hypothetical protein
LOC_Os08g44090Os.10947.1.S1_at11/118+27629093..27633020Endomembrane protein 70 containing protein, expressed
LOC_Os08g44100Os.10947.1.S1_at11/118+27638205..27641953Endomembrane protein 70 containing protein, expressed
LOC_Os08g44110OsAffx.29654.1.S1_at9/118+27642878..27646500retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17511.1.S1_at--398--8653Chr11:27695572..27695591 (20 bp)
TGGGCCTTTCTCTTGGCCGGAGTGC
NONE
OsAffx.17511.1.S1_at--1108--6451Chr08:27623600..27623624 (25 bp)
GATCAAGGACCGTCAGTACCTGCTC
LOC_Os08g44070
OsAffx.17511.1.S1_at--807--1171Chr08:27623614..27623638 (25 bp)
AGTACCTGCTCGTCCCGGAGGGCAC
LOC_Os08g44070
OsAffx.17511.1.S1_at--279--8351Chr08:27623753..27623777 (25 bp)
GGCGGCCACCATCTGGAGCAAGCTT
LOC_Os08g44070
OsAffx.17511.1.S1_at--368--3371Chr08:27623759..27623783 (25 bp)
CACCATCTGGAGCAAGCTTGGCGAT
LOC_Os08g44070
OsAffx.17511.1.S1_at--122--7572Chr08:27623790..27623814 (25 bp)
GGGCCGCGGGTGTTGCTCTACTACA
LOC_Os08g44070
OsAffx.17511.1.S1_at--848--7751Chr08:27623798..27623822 (25 bp)
GGTGTTGCTCTACTACACGTCGCTT
LOC_Os08g44070
OsAffx.17511.1.S1_at--584--9891Chr08:27623808..27623832 (25 bp)
TACTACACGTCGCTTCGCGTCGTCT
LOC_Os08g44070
OsAffx.17511.1.S1_at--884--10571Chr08:27623821..27623845 (25 bp)
TTCGCGTCGTCTGCGGGACCTACGA
LOC_Os08g44070
OsAffx.17511.1.S1_at--518--7171Chr08:27623829..27623853 (25 bp)
GTCTGCGGGACCTACGAGGACTGTC
LOC_Os08g44070
OsAffx.17511.1.S1_at--1066--8091Chr08:27623836..27623860 (25 bp)
GGACCTACGAGGACTGTCGTGCCGT
LOC_Os08g44070
Target Sequence 
TGGGCCTTTCTCTTGGCCGGAGTGCGGGGGAGACGGCAATGGGGAGCGGCGGAGGCGGTTGGGAGCGGGGACGGATCAAG
GACCGTCAGTACCTGCTCGTCCCGGAGGGCACCGACCACCCACCGCATGCCGCGCTGTCCTCCCCCTCCCCATCGCCGCC
GCACGTCTTCCACCGTATCCGCGTCGCCGCGTGCGCGCTGCGCGTCCTCCGCAACCTCCAGCCCGCGGCGGCCACCATCT
GGAGCAAGCTTGGCGATGGCGAGGGGCCGCGGGTGTTGCTCTACTACACGTCGCTTCGCGTCGTCTGCGGGACCTACGAG
GACTGTCGTGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis