Browse Element(s) Details


OsAffx.29656.1.S1_at

Description tigr:9636.m04499
TID=OsAffx.29656.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to multispanning membrane protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4415011/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44100Os.10947.1.S1_at11/118+27638205..27641953Endomembrane protein 70 containing protein, expressed
LOC_Os08g44110OsAffx.29654.1.S1_at9/118+27642878..27646500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g44124OsAffx.30340.1.S1_x_at2/118+27649285..27653530retrotransposon protein, putative, unclassified
LOC_Os08g44140Os.10947.1.S1_at7/118+27657462..27661313Transmembrane 9 superfamily protein member 2 precursor, putative, expressed
LOC_Os08g44150OsAffx.29656.1.S1_at11/118+27661488..27664495Endomembrane protein 70 containing protein, expressed
LOC_Os08g44160OsAffx.29657.1.S1_at11/118+27664727..27669909hypothetical protein
LOC_Os08g44160Os.54371.1.S1_x_at1/118+27664727..27669909hypothetical protein
LOC_Os08g44170OsAffx.17512.1.S1_at11/118+27670191..27677162transposon protein, putative, unclassified
LOC_Os08g44180OsAffx.6131.1.S1_at11/118+27678174..27681514expressed protein
LOC_Os08g44180Os.15204.1.S1_at1/118+27678174..27681514expressed protein
LOC_Os08g44190OsAffx.6132.1.S1_s_at11/118+27685413..27686119Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29656.1.S1_at--436--8951Chr08:27663915..27663939 (25 bp)
TGAAATCTCCGTTGCGTTTTGCTAC
LOC_Os08g44150
OsAffx.29656.1.S1_at--1066--4631Chr08:27663928..27663952 (25 bp)
GCGTTTTGCTACTATCAACTGCGAA
LOC_Os08g44150
OsAffx.29656.1.S1_at--793--371Chr08:27663941..27663965 (25 bp)
ATCAACTGCGAAGCGGCAACTACAA
LOC_Os08g44150
OsAffx.29656.1.S1_at--823--7511Chr08:27663972..27663996 (25 bp)
GTGGAGATCATTCCTTACACCAGGA
LOC_Os08g44150
OsAffx.29656.1.S1_at--673--9851Chr08:27663987..27664011 (25 bp)
TACACCAGGATGTTCTGCAGTCTAT
LOC_Os08g44150
OsAffx.29656.1.S1_at--117--6731Chr08:27663998..27664022 (25 bp)
GTTCTGCAGTCTATCTCTTCTTATA
LOC_Os08g44150
OsAffx.29656.1.S1_at--295--9551Chr08:27664016..27664040 (25 bp)
TCTTATATGCGACATTCTTCTTCTT
LOC_Os08g44150
OsAffx.29656.1.S1_at--17--10571Chr08:27664036..27664060 (25 bp)
TTCTTCGCGAAGCTGAGCATTGTTA
LOC_Os08g44150
OsAffx.29656.1.S1_at--223--5931Chr08:27664050..27664074 (25 bp)
GAGCATTGTTAAGCCAGTGTCAGTC
LOC_Os08g44150
OsAffx.29656.1.S1_at--640--7451Chr08:27664066..27664090 (25 bp)
GTGTCAGTCATGTTCTACTTTGGAT
LOC_Os08g44150
OsAffx.29656.1.S1_at--925--10831Chr08:27664085..27664109 (25 bp)
TTGGATACATGCTTGTCGTCTCATA
LOC_Os08g44150
Target Sequence 
TGAAATCTCCGTTGCGTTTTGCTACTATCAACTGCGAAGCGGCAACTACAAGTGGTGGTGGAGATCATTCCTTACACCAG
GATGTTCTGCAGTCTATCTCTTCTTATATGCGACATTCTTCTTCTTCGCGAAGCTGAGCATTGTTAAGCCAGTGTCAGTC
ATGTTCTACTTTGGATACATGCTTGTCGTCTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis