Browse Element(s) Details


Os.53801.1.S1_at

Description gb:AK100125.1
DB_XREF= gi:32985334
TID=Os.53801.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53801 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008D01, full insert sequence.
FL= gb:AK100125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1780011/11Phosphatidylinositol transfer protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17760Os.14770.1.S1_at11/113+9857077..9859981RNA recognition motif family protein, expressed
LOC_Os03g17770OsAffx.30237.2.S1_x_at11/113+9869463..9870476hypothetical protein
LOC_Os03g17780Os.25009.1.A1_at11/113+9872475..9875649WD domain containing protein, putative, expressed
LOC_Os03g17790Os.15938.1.S1_at5/113+9879055..9879343hypothetical protein
LOC_Os03g17800Os.53801.1.S1_at11/113+9883680..9886059Phosphatidylinositol transfer protein, expressed
LOC_Os03g17810Os.53414.1.S1_at11/113+9895146..9896337LOB domain protein 1, putative, expressed
LOC_Os03g17820OsAffx.12902.1.S1_at10/113+9900096..9901885hypothetical protein
LOC_Os03g17830NANA3+9908522..9909043hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53801.1.S1_at--1006--2071Chr03:9884493..9884517 (25 bp)
ACATCGCGTTGCAGTCGAGGGACTA
LOC_Os03g17800
Os.53801.1.S1_at--397--8071Chr03:9884466..9884490 (25 bp)
GGAGCAAGGTGATCAGCGCCCCAAA
LOC_Os03g17800
Os.53801.1.S1_at--1003--8951Chr03:9884433..9884457 (25 bp)
TGACAGCCTTCAGGTCGCAGAGGAC
LOC_Os03g17800
Os.53801.1.S1_at--51--6211Chr03:9884403..9884427 (25 bp)
GAGGCCCTCTCTTGAAGGGTTGGAT
LOC_Os03g17800
Os.53801.1.S1_at--303--6611Chr03:9884308..9884409 (25 bp)
GTTGGATGGATTCATGCCGTCCCGT
LOC_Os03g17800
Os.53801.1.S1_at--1023--8611Chr03:9884266..9884290 (25 bp)
TGGTGATCATGGACGCTCCGATCTG
LOC_Os03g17800
Os.53801.1.S1_at--289--8631Chr03:9884236..9884260 (25 bp)
TGGGTGAACGCCTGGAAGACTGCAT
LOC_Os03g17800
Os.53801.1.S1_at--998--1311Chr03:9884022..9884046 (25 bp)
AGATGGAGCGTCAGACCGACCTGCT
LOC_Os03g17800
Os.53801.1.S1_at--172--4711Chr03:9883823..9883847 (25 bp)
GCTGTCGGGAGCTGCACGTAGTAAA
LOC_Os03g17800
Os.53801.1.S1_at--589--791Chr03:9883782..9883806 (25 bp)
ATGTGGTTCGCTACACTGGATGGCT
LOC_Os03g17800
Os.53801.1.S1_at--1034--8551Chr03:9883766..9883790 (25 bp)
TGGATGGCTCCAAGCTGTCACTCTG
LOC_Os03g17800
Target Sequence 
ACATCGCGTTGCAGTCGAGGGACTACTGGAGCAAGGTGATCAGCGCCCCAAACGTCGACCTGACAGCCTTCAGGTCGCAG
AGGACGAGCCGAGGCCCTCTCTTGAAGGGTTGGATGGATTCATGCCGTCCCGTCATGACCACGTACAAGCTGGTGATCAT
GGACGCTCCGATCTGGGGCTTGGGTGAACGCCTGGAAGACTGCATCATCGCGGGGGAGAGGGCGCTGTTCTTGGCGTGCC
ACCGGCTGTGCTTCGCGTGGATCGACGAGTGGTACGGCATGACGTTGGATCAGATCCGAGAGATGGAGCGTCAGACCGAC
CTGCTTCTCAAGAAGACGCTGAAGAAGCCTGCGAAGGCCGGGAGCAAGCACGATGGCAAGAGGAAGACGCTCAAAGAGGA
GATTGTAGCTGTCGGGAGCTGCACGTAGTAAATTGGATTCTACGCGAGATGTGGTTCGCTACACTGGATGGCTCCAAGCT
GTCACTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis