Browse Element(s) Details


Os.53856.1.S1_at

Description gb:AK100419.1
DB_XREF= gi:32985628
TID=Os.53856.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088A20, full insert sequence.
FL= gb:AK100419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3486011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34810NANA1+19544645..19547536retrotransposon protein, putative, unclassified
LOC_Os01g34820NANA1+19548164..19551455retrotransposon protein, putative, unclassified
LOC_Os01g34830OsAffx.23514.4.S1_at10/111+19556334..19559767hypothetical protein
LOC_Os01g34840NANA1+19563216..19566835retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34850Os.19896.2.S1_x_at11/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34850Os.57530.1.S1_x_at6/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34860Os.53856.1.S1_at11/111+19572000..19575033expressed protein
LOC_Os01g34860OsAffx.5148.1.S1_x_at4/111+19572000..19575033expressed protein
LOC_Os01g34870Os.37127.1.A1_at10/111+19579739..19584249Barren protein, expressed
LOC_Os01g34880OsAffx.21286.1.S1_at9/111+19585422..19587686glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34890OsAffx.21285.2.S1_at11/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34890Os.20183.1.S1_at1/111+19591311..19607305glycosyl transferase family 48 protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53856.1.S1_at--709--5511Chr01:19572465..19572596 (25 bp)
GAAAATCAAAACACGCTCGTTGTTG
LOC_Os01g34860
Os.53856.1.S1_at--358--2411Chr01:19572457..19572588 (25 bp)
AAACACGCTCGTTGTTGTTATTGTG
LOC_Os01g34860
Os.53856.1.S1_at--474--6791Chr01:19572441..19572465 (25 bp)
GTTATTGTGAATATGAAGGGACCAG
LOC_Os01g34860
Os.53856.1.S1_at--147--2712Chr06:29532716..29532740 (25 bp)
AAGCTAGAGTGACATTGAGAGGCAT
NONE
Os.53856.1.S1_at--1085--6011Chr01:19572145..19572169 (25 bp)
GAGAGGCATGAACCAGAACTGCTTT
LOC_Os01g34860
Os.53856.1.S1_at--492--5432Chr06:29532659..29532765 (25 bp)
GAACCAGAACTGCTTTATGGGTGAA
NONE
Os.53856.1.S1_at--24--812Chr06:29532757..29532781 (25 bp)
ATGGGTGAATGCAAGCTAGAGTGAT
NONE
Os.53856.1.S1_at--1015--10072Chr06:29532792..29532816 (25 bp)
TAGGTGATGTGTATTCCGATGTCTT
NONE
Os.53856.1.S1_at--250--6272Chr06:29532797..29532821 (25 bp)
GATGTGTATTCCGATGTCTTATTTT
NONE
Os.53856.1.S1_at--788--6852Chr06:29532802..29532826 (25 bp)
GTATTCCGATGTCTTATTTTAATGA
NONE
Os.53856.1.S1_at--40--8671Chr01:19572024..19572048 (25 bp)
TGTGGACTTGATGGTTATTTATAAT
LOC_Os01g34860
Target Sequence 
GAAAATCAAAACACGCTCGTTGTTGTTATTGTGAATATGAAGGGACCAGGATTATGCATCCTGCGCATCCGATTGAAAAT
TATTGTGGTGGCGACATGGACTTCATAGAAATGGCGCATGGCACTCATAAGCTGACCAATGCAAGAATCATTAGTTGTGG
GAAGTGCGCAGGCAATAGAGTAGGCATGTGTGGGGACGATTATATCTATTTCGATCCTACCCGAGATGCTAAGTTCGCCC
AATGCATGAACCGGACTGCTTCAAGGGCGAATATAAGCTGGAGTGNCATTTTAAAGGTGAATACAAGCTAGAGTGACATT
GAGAGGCATGAACCAGAACTGCTTTATGGGTGAATGCAAGCTAGAGTGATATTGATAGTATAGGTGATGTGTATTCCGAT
GTCTTATTTTAATGAAGATATCTTTTTTTATTATAATTTTATGTGGACTTGATGGTTATTTATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis