Browse Element(s) Details

Os.53869.1.S1_at

Description

gb:AK100511.1
DB_XREF= gi:32985720
TID=Os.53869.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53869 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099N19, full insert sequence.
FL= gb:AK100511.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g42860	10/11	ab-hydrolase associated lipase region family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g42800	Os.49369.1.S1_at	3/11	6	+	25726916..25731891	strubbelig receptor family 8, putative
LOC_Os06g42810	Os.11523.1.S1_at	11/11	6	+	25736421..25740550	UBX domain containing protein, expressed
LOC_Os06g42820	Os.46515.2.S1_x_at	9/11	6	+	25740929..25741670	hypothetical protein
LOC_Os06g42820	Os.46515.2.S1_at	9/11	6	+	25740929..25741670	hypothetical protein
LOC_Os06g42840	Os.15920.1.S1_at	2/11	6	+	25744851..25745141	hypothetical protein
LOC_Os06g42850	Os.52613.1.S1_at	10/11	6	+	25746268..25748947	expressed protein
LOC_Os06g42860	Os.53869.1.S1_at	10/11	6	+	25753899..25756446	ab-hydrolase associated lipase region family protein, expressed
LOC_Os06g42870	NA	NA	6	+	25757593..25758777	transposon protein, putative, Pong sub-class
LOC_Os06g42880	NA	NA	6	+	25762645..25763073	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g42890	OsAffx.28070.1.S1_at	11/11	6	+	25766853..25768666	myb family protein, putative
LOC_Os06g42900	Os.40360.1.S1_at	9/11	6	+	25772770..25776368	hypothetical protein
LOC_Os06g42900	Os.40360.1.S1_x_at	7/11	6	+	25772770..25776368	hypothetical protein
LOC_Os06g42900	Os.40855.5.S1_x_at	3/11	6	+	25772770..25776368	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0003824	molecular_function	catalytic activity
GO:0016298	molecular_function	lipase activity
GO:0016787	molecular_function	hydrolase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53869.1.S1_at--995--175	1	Chr06:25754240..25754264 (25 bp)	ACCTCCTGAGGACGCTGGTCAAGAA	LOC_Os06g42860
Os.53869.1.S1_at--982--51	1	Chr06:25754199..25754223 (25 bp)	ATCGAGGTGATCTACGTGCCAGACT	LOC_Os06g42860
Os.53869.1.S1_at--787--995	1	Chr06:25754175..25754199 (25 bp)	TACGCGCATGCCGACTTTATCATGG	LOC_Os06g42860
Os.53869.1.S1_at--489--41	1	Chr06:25754157..25754181 (25 bp)	ATCATGGCCTACAATGCTCCAGAAC	LOC_Os06g42860
Os.53869.1.S1_at--768--1015	1	Chr06:25754129..25754153 (25 bp)	TATACGGACCGATGGTCGACTTCTT	LOC_Os06g42860
Os.53869.1.S1_at--142--723	1	Chr06:25754115..25754139 (25 bp)	GTCGACTTCTTTAAGCGTCACTGAA	LOC_Os06g42860
Os.53869.1.S1_at--724--125	1	Chr06:25754078..25754102 (25 bp)	AGATTTCACCATTGGCTGTATGCAT	LOC_Os06g42860
Os.53869.1.S1_at--538--155	1	Chr06:25753998..25754022 (25 bp)	AGCTTGCATCCATCAGTACATCTTT	LOC_Os06g42860
Os.53869.1.S1_at--527--27	1	Chr06:25753958..25753982 (25 bp)	ATATGTCAGTTCCACCATGCTAGAT	LOC_Os06g42860
Os.53869.1.S1_at--776--989	1	Chr06:25753903..25753927 (25 bp)	TACTCGATCTCGTTGTAATCACAAT	LOC_Os06g42860
Os.53869.1.S1_at--837--655	1	Chr06:25753872..25753896 (25 bp)	GATTCACTGGTCTCTTGCAAAAAAT	NONE

Target Sequence

ACCTCCTGAGGACGCTGGTCAAGAAGCACAACAGCGACAGCATCGAGGTGATCTACGTGCCAGACTACGCGCATGCCGAC
TTTATCATGGCCTACAATGCTCCAGAACTCATATACGGACCGATGGTCGACTTCTTTAAGCGTCACTGAAACCAGATCCA
CCAGATTTCACCATTGGCTGTATGCATTGCCAAAGTAGCAGCTGTATGACAAGTTTCAGCATTGAAGATTTCAGTCTCAC
TGAGCTTGCATCCATCAGTACATCTTTGTCATGTCAAAGTATATATGTCAGTTCCACCATGCTAGATAACACGAAAATAA
AGGATTTGATAAATTGTTACTCGATCTCGTTGTAATCACAATGTTCTTGATTCACTGGTCTCTTGCAAAAAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis