Browse Element(s) Details


Os.53882.1.S1_at

Description gb:AK100586.1
DB_XREF= gi:32985795
TID=Os.53882.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023106B10, full insert sequence.
FL= gb:AK100586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3006011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30010OsAffx.13116.1.S1_at11/113+17074336..17076326hypothetical protein
LOC_Os03g30020OsAffx.13117.1.S1_at11/113+17081360..17082120hypothetical protein
LOC_Os03g30030NANA3+17089307..17090821retrotransposon, putative, centromere-specific
LOC_Os03g30040OsAffx.28308.2.S1_x_at1/113+17092741..17093572retrotransposon, putative, centromere-specific
LOC_Os03g30050OsAffx.25291.1.S1_at11/113+17095925..17096698protein kinase family protein, putative
LOC_Os03g30060Os.53882.1.S1_at11/113+17097935..17099337expressed protein
LOC_Os03g30070NANA3+17102286..17105618transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30080Os.14491.2.S1_x_at5/113+17107202..17112018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30080Os.47463.1.S1_x_at5/113+17107202..17112018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30084OsAffx.5807.1.S1_at1/113+17114433..17115134hypothetical protein
LOC_Os03g30088OsAffx.25292.1.S1_at11/113+17116893..17120104hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53882.1.S1_at--917--3971Chr03:17098404..17098428 (25 bp)
CGGTGTATGCGCTCCTGGCGATCGC
LOC_Os03g30060
Os.53882.1.S1_at--412--1751Chr03:17098336..17098360 (25 bp)
ACCTGCCGGACGATGAAGGGCCCAG
LOC_Os03g30060
Os.53882.1.S1_at--66--8791Chr03:17098281..17098305 (25 bp)
TGTTCAGGGCCAGCCCGAGGCGCTA
LOC_Os03g30060
Os.53882.1.S1_at--236--4931Chr03:17098162..17098186 (25 bp)
GCTTGCATTGTCTATCTGGGTGCCA
LOC_Os03g30060
Os.53882.1.S1_at--685--3891Chr03:17098147..17098171 (25 bp)
CTGGGTGCCAAGATGTTGCACTGAA
LOC_Os03g30060
Os.53882.1.S1_at--708--10731Chr03:17098132..17098156 (25 bp)
TTGCACTGAAGCAGCTTGAAACCTT
LOC_Os03g30060
Os.53882.1.S1_at--708--5551Chr03:17098115..17098139 (25 bp)
GAAACCTTAGTTCAGAGATGACCAA
LOC_Os03g30060
Os.53882.1.S1_at--1027--10711Chr03:17098075..17098099 (25 bp)
TTGCTGCTGCTACTAGTTAAGTGTT
LOC_Os03g30060
Os.53882.1.S1_at--549--9751Chr03:17098043..17098067 (25 bp)
TAATAGTTCAGAATCGGCGAGCCGT
LOC_Os03g30060
Os.53882.1.S1_at--606--9451Chr03:17098030..17098054 (25 bp)
TCGGCGAGCCGTTTAGATGCAGTAT
LOC_Os03g30060
Os.53882.1.S1_at--943--131Chr03:17097981..17098005 (25 bp)
ATTAAGCTGCTCCTGTGATGTTCAC
LOC_Os03g30060
Target Sequence 
CGGTGTATGCGCTCCTGGCGATCGCGCTCCTCGCCGTGGCGTTCCTCGGCGGCGCCGTGTGCGCCCTCACCTGCCGGACG
ATGAAGGGCCCAGGGCTCGGCGGTGCGCGCGTCCCCCGCGCCGTGTTCAGGGCCAGCCCGAGGCGCTACTACGCCGCCGT
CCGGACGGCGCGGAAGGCTCGCCGCAGCGCCTCGGGGATCAGGTGGAAGAACCTGGTCGCCGCCATGTCGCTCGCCGTCG
CTGCTTGCATTGTCTATCTGGGTGCCAAGATGTTGCACTGAAGCAGCTTGAAACCTTAGTTCAGAGATGACCAAATCTTA
TGGAGAATTTTGCTGCTGCTACTAGTTAAGTGTTAAGTAGTTAATAGTTCAGAATCGGCGAGCCGTTTAGATGCAGTATG
GTGCTAATAATGGTACAATGTTAATTAAGCTGCTCCTGTGATGTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis