Browse Element(s) Details


OsAffx.13116.1.S1_at

Description tigr:9631.m02933
TID=OsAffx.13116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3001011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29980Os.24495.2.S1_x_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29980Os.24495.1.S1_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29990OsAffx.3367.1.S1_at9/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.28338.3.A1_x_at7/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.5300.2.S1_at1/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.17065.1.A1_s_at1/113+17059193..17061202hypothetical protein
LOC_Os03g30000Os.53812.1.S1_at11/113+17064129..17068701Glycosyl transferase family 8 protein, expressed
LOC_Os03g30010OsAffx.13116.1.S1_at11/113+17074336..17076326hypothetical protein
LOC_Os03g30020OsAffx.13117.1.S1_at11/113+17081360..17082120hypothetical protein
LOC_Os03g30030NANA3+17089307..17090821retrotransposon, putative, centromere-specific
LOC_Os03g30040OsAffx.28308.2.S1_x_at1/113+17092741..17093572retrotransposon, putative, centromere-specific
LOC_Os03g30050OsAffx.25291.1.S1_at11/113+17095925..17096698protein kinase family protein, putative
LOC_Os03g30060Os.53882.1.S1_at11/113+17097935..17099337expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13116.1.S1_at--955--1151Chr03:17075478..17075502 (25 bp)
AGTCTCTAATGTCACTACTGCTCAT
LOC_Os03g30010
OsAffx.13116.1.S1_at--166--4751Chr03:17075459..17075483 (25 bp)
GCTCATGGCCCACTGAAATTAGAAG
LOC_Os03g30010
OsAffx.13116.1.S1_at--763--1991Chr03:17074564..17074588 (25 bp)
ACTCCCTCTATTGCCAATTGAACTG
LOC_Os03g30010
OsAffx.13116.1.S1_at--547--1951Chr03:17074543..17074567 (25 bp)
ACTGATCTACGGGACAAGCTACCTC
LOC_Os03g30010
OsAffx.13116.1.S1_at--918--2131Chr03:17074517..17074541 (25 bp)
ACAGTTGTGGGCCTGTCCTGAGCCT
LOC_Os03g30010
OsAffx.13116.1.S1_at--1141--8911Chr03:17074499..17074523 (25 bp)
TGAGCCTCCACTGTTACAACAATTC
LOC_Os03g30010
OsAffx.13116.1.S1_at--104--111Chr03:17074478..17074502 (25 bp)
ATTCGTGCACGAAGCTGACTGCCGA
LOC_Os03g30010
OsAffx.13116.1.S1_at--1065--2971Chr03:17074441..17074465 (25 bp)
AATGGGCATTGGTACATGGCGGCAT
LOC_Os03g30010
OsAffx.13116.1.S1_at--482--3011Chr03:17074416..17074440 (25 bp)
AATGAAGAGCCATTACTGCCACCTC
LOC_Os03g30010
OsAffx.13116.1.S1_at--1060--10831Chr03:17074391..17074415 (25 bp)
TTGTGGCATGTCCTCAATGTGTTGC
LOC_Os03g30010
OsAffx.13116.1.S1_at--1149--8671Chr03:17074374..17074398 (25 bp)
TGTGTTGCGCTACCCCTGGAAGAGA
LOC_Os03g30010
Target Sequence 
AGTCTCTAATGTCACTACTGCTCATGGCCCACTGAAATTAGAAGAGAAACCACTCCCTCTATTGCCAATTGAACTGATCT
ACGGGACAAGCTACCTCCACAGTTGTGGGCCTGTCCTGAGCCTCCACTGTTACAACAATTCGTGCACGAAGCTGACTGCC
GAGGGAAAGAGGGAAATGGGCATTGGTACATGGCGGCATAATGAAGAGCCATTACTGCCACCTCTTGTGGCATGTCCTCA
ATGTGTTGCGCTACCCCTGGAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis