Browse Element(s) Details


Os.53812.1.S1_at

Description gb:AK100228.1
DB_XREF= gi:32985437
TID=Os.53812.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048J06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048J06, full insert sequence.
FL= gb:AK100228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3000011/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29960OsAffx.25290.1.S1_at11/113+17032788..17039265expressed protein
LOC_Os03g29960OsAffx.21694.1.S1_at1/113+17032788..17039265expressed protein
LOC_Os03g29970Os.49770.1.S1_s_at11/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29970OsAffx.23994.1.S1_x_at1/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29980Os.24495.2.S1_x_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29980Os.24495.1.S1_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29990OsAffx.3367.1.S1_at9/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.28338.3.A1_x_at7/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.5300.2.S1_at1/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.17065.1.A1_s_at1/113+17059193..17061202hypothetical protein
LOC_Os03g30000Os.53812.1.S1_at11/113+17064129..17068701Glycosyl transferase family 8 protein, expressed
LOC_Os03g30010OsAffx.13116.1.S1_at11/113+17074336..17076326hypothetical protein
LOC_Os03g30020OsAffx.13117.1.S1_at11/113+17081360..17082120hypothetical protein
LOC_Os03g30030NANA3+17089307..17090821retrotransposon, putative, centromere-specific
LOC_Os03g30040OsAffx.28308.2.S1_x_at1/113+17092741..17093572retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0045489biological_processpectin biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53812.1.S1_at--1017--4311Chr03:17064701..17064725 (25 bp)
CCATTCGTCGGTACAAGTATATATG
LOC_Os03g30000
Os.53812.1.S1_at--1070--10091Chr03:17064680..17064704 (25 bp)
TATGGGAGCGGTATGTCAATTTCAC
LOC_Os03g30000
Os.53812.1.S1_at--922--7071Chr03:17064666..17064690 (25 bp)
GTCAATTTCACACACCCATATGTTA
LOC_Os03g30000
Os.53812.1.S1_at--395--10511Chr03:17064660..17064684 (25 bp)
TTCACACACCCATATGTTAGAGAGT
LOC_Os03g30000
Os.53812.1.S1_at--769--5571Chr03:17064622..17064646 (25 bp)
GAAAGTCTGCAATCACTGTTCACCA
LOC_Os03g30000
Os.53812.1.S1_at--796--7171Chr03:17064618..17064642 (25 bp)
GTCTGCAATCACTGTTCACCATGAA
LOC_Os03g30000
Os.53812.1.S1_at--459--391Chr03:17064611..17064635 (25 bp)
ATCACTGTTCACCATGAATGTGTCA
LOC_Os03g30000
Os.53812.1.S1_at--287--9011Chr03:17064597..17064621 (25 bp)
TGAATGTGTCATGCCATTGAAGCTA
LOC_Os03g30000
Os.53812.1.S1_at--645--3151Chr03:17064412..17064436 (25 bp)
AATTCCTTTGCAGATTTTTACATAC
LOC_Os03g30000
Os.53812.1.S1_at--836--8611Chr03:17064213..17064237 (25 bp)
TGGTGAAGAAGCTTCTCCTTTTCTC
LOC_Os03g30000
Os.53812.1.S1_at--229--4911Chr03:17064203..17064227 (25 bp)
GCTTCTCCTTTTCTCTTTGTATAAA
LOC_Os03g30000
Target Sequence 
CCATTCGTCGGTACAAGTATATATGGGAGCGGTATGTCAATTTCACACACCCATATGTTAGAGAGTGTTNGTNGCATTAG
AAAGTCTGCAATCACTGTTCACCATGAATGTGTCATGCCATTGAAGCTAGGCGCTTCGGNTTCTTACATGGAGNTGCTNT
NTGGCACCTTGTNTANGAAATCCTTCGGAGAGGTANATTNNNTNCNNAANANNNNNNANNAANNNAGNNNANNNNTNNNN
NNNNNNNNTNGGNGGGGGACTTGGGGGAGATTCATTTTGAGATGAAAATAATTCCTTTGCAGATTTTTACATACAATTTG
GACTGGAAATTTTAGCAGTCTAACCAGATCATCTGGATAGATATTGTAAAAGAGATATAGGTGTTGGATCGATGGGGTCA
ATTTTTGAGATGTAGGAAATGCCAATTGCCGATTCAGCTGTTCANNGNTGNTGGTGTTACATTCTTTCCAGAACATTGTG
TTTTATACTGGTGAAGAAGCTTCTCCTTTTCTCTTTGTATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis