Browse Element(s) Details


Os.24495.2.S1_x_at

Description gb:AK063316.1
DB_XREF= gi:32973334
TID=Os.24495.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G09, full insert sequence.
FL= gb:AK063316.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2998011/11ACT domain containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29950Os.20940.1.S1_at11/113+17022722..17027180Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g29960OsAffx.25290.1.S1_at11/113+17032788..17039265expressed protein
LOC_Os03g29960OsAffx.21694.1.S1_at1/113+17032788..17039265expressed protein
LOC_Os03g29970Os.49770.1.S1_s_at11/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29970OsAffx.23994.1.S1_x_at1/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29980Os.24495.2.S1_x_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29980Os.24495.1.S1_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29990OsAffx.3367.1.S1_at9/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.28338.3.A1_x_at7/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.5300.2.S1_at1/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.17065.1.A1_s_at1/113+17059193..17061202hypothetical protein
LOC_Os03g30000Os.53812.1.S1_at11/113+17064129..17068701Glycosyl transferase family 8 protein, expressed
LOC_Os03g30010OsAffx.13116.1.S1_at11/113+17074336..17076326hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006521biological_processregulation of amino acid metabolism
GO:0009735biological_processresponse to cytokinin stimulus
GO:0005829cellular_componentcytosol
GO:0016597molecular_functionamino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24495.2.S1_x_at--775--4951Chr03:17049183..17049207 (25 bp)
GCATATTGATGGCTCACCTGTCAAC
LOC_Os03g29980
Os.24495.2.S1_x_at--858--2151Chr03:17049222..17049246 (25 bp)
ACAGCGAGTCATCCAGTGTCTTGAA
LOC_Os03g29980
Os.24495.2.S1_x_at--986--6111Chr03:17049710..17049734 (25 bp)
GAGTGGGACTGCTATCCGATGTCAC
LOC_Os03g29980
Os.24495.2.S1_x_at--19--1831Chr03:17049735..17049759 (25 bp)
ACGCATCTTCCGTGAGAATGGCTTG
LOC_Os03g29980
Os.24495.2.S1_x_at--734--2471Chr03:17049805..17049829 (25 bp)
AACACTTTCTATGTCCGCGATGCAG
LOC_Os03g29980
Os.24495.2.S1_x_at--644--5371Chr03:17049852..17049876 (25 bp)
GAAGACTCTTGAAGCTATACGCCAA
LOC_Os03g29980
Os.24495.2.S1_x_at--366--6491Chr03:17049879..17049903 (25 bp)
GATAGGCCAGACAGTGCTTCAAGTA
LOC_Os03g29980
Os.24495.2.S1_x_at--891--4431Chr03:17049945..17049969 (25 bp)
GCCATCTAGGTTTCTCTTCAGCAGT
LOC_Os03g29980
Os.24495.2.S1_x_at--513--411Chr03:17050006..17050030 (25 bp)
ATCAGGTCCTGAGTTCTTGGGTGCC
LOC_Os03g29980
Os.24495.2.S1_x_at--371--3091Chr03:17050075..17050099 (25 bp)
AATACATCGCGGTGTATACTCTCCG
LOC_Os03g29980
Os.24495.2.S1_x_at--305--9051Chr03:17050129..17050153 (25 bp)
TGCATTTGACTCAGGTGGCGTACCA
LOC_Os03g29980
Target Sequence 
GCATATTGATGGCTCACCTGTCAACTCTGAGGCGGAGCGACAGCGAGTCATCCAGTGTCTTGAAGCTGCTATAGAAAGGA
GAGTATCCGAGGGGCTGAAGCTAGAGTTGTCGACAGGTGATAGAGTGGGACTGCTATCCGATGTCACACGCATCTTCCGT
GAGAATGGCTTGACGGTTACGAGAGCTGAAGTTTCTACTAGGGGTGACAAGGCTGTCAACACTTTCTATGTCCGCGATGC
AGCAGGGAGCTCCGCCGTCGATCTGAAGACTCTTGAAGCTATACGCCAAGAGATAGGCCAGACAGTGCTTCAAGTAAAAG
GGCACCCTGATCACCGCAAATCACCTCCGCAAGAGTCGCCATCTAGGTTTCTCTTCAGCAGTCTGTTCAGACCAAGATCG
CTGTACAGCCTAGGGCTGATCAGGTCCTGAGTTCTTGGGTGCCTGCTCAATCCGCGGATCGACAAATCATAGCATGCCAT
GTCAACAAATACATCGCGGTGTATACTCTCCGCAGTCTCAGTCCCAGGACAAGGCTGATGATGCATTTGACTCAGGTGGC
GTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24495.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis