Browse Element(s) Details


Os.49770.1.S1_s_at

Description gb:AY062181.1
DB_XREF= gi:37542668
GEN=HAP3a
TID=Os.49770.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49770 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) HAP3-like transcriptional-activator (HAP3a) mRNA, complete cds.
PROD=HAP3-like transcriptional-activator
FL= gb:AY062181.1 gb:AK060225.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2997011/11CCAAT-binding transcription factor subunit A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29940OsAffx.31892.2.S1_x_at1/113+17015002..17021628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29950Os.20940.1.S1_at11/113+17022722..17027180Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g29960OsAffx.25290.1.S1_at11/113+17032788..17039265expressed protein
LOC_Os03g29960OsAffx.21694.1.S1_at1/113+17032788..17039265expressed protein
LOC_Os03g29970Os.49770.1.S1_s_at11/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29970OsAffx.23994.1.S1_x_at1/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29980Os.24495.2.S1_x_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29980Os.24495.1.S1_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29990OsAffx.3367.1.S1_at9/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.28338.3.A1_x_at7/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.5300.2.S1_at1/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.17065.1.A1_s_at1/113+17059193..17061202hypothetical protein
LOC_Os03g30000Os.53812.1.S1_at11/113+17064129..17068701Glycosyl transferase family 8 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49770.1.S1_s_at--338--7571Chr03:17040972..17040996 (25 bp)
GGGCGCTTGACATCGCTCCGAGACG
LOC_Os03g29970
Os.49770.1.S1_s_at--691--531Chr03:17040983..17041007 (25 bp)
ATCGCTCCGAGACGAGTAGCATGCA
LOC_Os03g29970
Os.49770.1.S1_s_at--385--3811Chr03:17040987..17041011 (25 bp)
CTCCGAGACGAGTAGCATGCACCAT
LOC_Os03g29970
Os.49770.1.S1_s_at--795--9251Chr03:17040988..17041012 (25 bp)
TCCGAGACGAGTAGCATGCACCATG
LOC_Os03g29970
Os.49770.1.S1_s_at--943--4071Chr03:17040990..17041014 (25 bp)
CGAGACGAGTAGCATGCACCATGGT
LOC_Os03g29970
Os.49770.1.S1_s_at--767--1391Chr03:17040992..17041016 (25 bp)
AGACGAGTAGCATGCACCATGGTAC
LOC_Os03g29970
Os.49770.1.S1_s_at--855--1871Chr03:17040994..17041018 (25 bp)
ACGAGTAGCATGCACCATGGTACAT
LOC_Os03g29970
Os.49770.1.S1_s_at--1159--6071Chr03:17040996..17041020 (25 bp)
GAGTAGCATGCACCATGGTACATAT
LOC_Os03g29970
Os.49770.1.S1_s_at--876--6951Chr03:17040998..17041022 (25 bp)
GTAGCATGCACCATGGTACATATAT
LOC_Os03g29970
Os.49770.1.S1_s_at--450--4991Chr03:17041001..17041025 (25 bp)
GCATGCACCATGGTACATATATACA
LOC_Os03g29970
Os.49770.1.S1_s_at--1127--2071Chr03:17041015..17041039 (25 bp)
ACATATATACAGTAATCAGCAGCTG
LOC_Os03g29970
Target Sequence 
GGGCGCTTGACATCGCTCCGAGACGAGTAGCATGCACCATGGTACATATATACAGTAATCAGCAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49770.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis