Browse Element(s) Details


OsAffx.3367.1.S1_at

Description tigr:9631.m02931
TID=OsAffx.3367.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g299909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29960OsAffx.25290.1.S1_at11/113+17032788..17039265expressed protein
LOC_Os03g29960OsAffx.21694.1.S1_at1/113+17032788..17039265expressed protein
LOC_Os03g29970Os.49770.1.S1_s_at11/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29970OsAffx.23994.1.S1_x_at1/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29980Os.24495.2.S1_x_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29980Os.24495.1.S1_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29990OsAffx.3367.1.S1_at9/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.28338.3.A1_x_at7/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.5300.2.S1_at1/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.17065.1.A1_s_at1/113+17059193..17061202hypothetical protein
LOC_Os03g30000Os.53812.1.S1_at11/113+17064129..17068701Glycosyl transferase family 8 protein, expressed
LOC_Os03g30010OsAffx.13116.1.S1_at11/113+17074336..17076326hypothetical protein
LOC_Os03g30020OsAffx.13117.1.S1_at11/113+17081360..17082120hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3367.1.S1_at--1010--3811NONE
CTCCAGATCCGGCTTCGCTCAGAAG
NONE
OsAffx.3367.1.S1_at--166--7671Chr03:17060543..17060567 (25 bp)
GGTGGTTATGGAGACCTCGTCATTA
LOC_Os03g29990
OsAffx.3367.1.S1_at--973--8051Chr03:17060534..17060558 (25 bp)
GGAGACCTCGTCATTATGTTATCGA
LOC_Os03g29990
OsAffx.3367.1.S1_at--599--9592Chr11:10501914..10501937 (24 bp)
TCATTATGTTATCGAAGCTGCTTGC
NONE
OsAffx.3367.1.S1_at--1150--4911NONE
GCTTGCCTTTTGGTTGTTGAGTTCT
NONE
OsAffx.3367.1.S1_at--187--10251Chr03:17059313..17059334 (22 bp)
TTTGGTTGTTGAGTTCTTCCTTGCA
LOC_Os03g29990
OsAffx.3367.1.S1_at--281--8811Chr03:17059307..17059331 (25 bp)
TGTTGAGTTCTTCCTTGCAAAAATC
LOC_Os03g29990
OsAffx.3367.1.S1_at--629--2131Chr03:17059266..17059290 (25 bp)
ACAAGTTCCTTTCATTTGGACTATT
LOC_Os03g29990
OsAffx.3367.1.S1_at--559--5691Chr03:17059248..17059272 (25 bp)
GACTATTAGTAGGACAGAGACACGT
LOC_Os03g29990
OsAffx.3367.1.S1_at--1081--1171Chr03:17059241..17059265 (25 bp)
AGTAGGACAGAGACACGTTAACCGA
LOC_Os03g29990
OsAffx.3367.1.S1_at--645--5951Chr03:17059232..17059256 (25 bp)
GAGACACGTTAACCGAAAGGCACAA
LOC_Os03g29990
Target Sequence 
CTCCAGATCCGGCTTCGCTCAGAAGGTTTCTGCTCCACTAGAGGATGTTTGGTGGTTATGGAGACCTCGTCATTATGTTA
TCGAAGCTGCTTGCCTTTTGGTTGTTGAGTTCTTCCTTGCAAAAATCCACATGGGGGAAATCCACAAGTTCCTTTCATTT
GGACTATTAGTAGGACAGAGACACGTTAACCGAAAGGCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis