Browse Element(s) Details


OsAffx.21694.1.S1_at

Description gb:AK064582.1
DB_XREF= gi:32974600
TID=OsAffx.21694.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-F03, full insert sequence.
FL= gb:AK064582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g299601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29930Os.56891.1.S1_at11/113+17008119..17009227expressed protein
LOC_Os03g29940OsAffx.31892.2.S1_x_at1/113+17015002..17021628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29950Os.20940.1.S1_at11/113+17022722..17027180Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g29960OsAffx.25290.1.S1_at11/113+17032788..17039265expressed protein
LOC_Os03g29960OsAffx.21694.1.S1_at1/113+17032788..17039265expressed protein
LOC_Os03g29970Os.49770.1.S1_s_at11/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29970OsAffx.23994.1.S1_x_at1/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29980Os.24495.2.S1_x_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29980Os.24495.1.S1_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29990OsAffx.3367.1.S1_at9/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.28338.3.A1_x_at7/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.5300.2.S1_at1/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.17065.1.A1_s_at1/113+17059193..17061202hypothetical protein
LOC_Os03g30000Os.53812.1.S1_at11/113+17064129..17068701Glycosyl transferase family 8 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21694.1.S1_at--209--3371Chr01:33877409..33877433 (25 bp)
CACCTTACCTTAATCCATTTTCTTG
NONE
OsAffx.21694.1.S1_at--176--1011Chr01:33877434..33877458 (25 bp)
AGGATCTTGCATTTGTTCGTTCTCT
NONE
OsAffx.21694.1.S1_at--418--10591Chr01:33877453..33877477 (25 bp)
TTCTCTGCCGACCTATTGTTTCCAT
NONE
OsAffx.21694.1.S1_at--435--51Chr01:33877467..33877491 (25 bp)
ATTGTTTCCATCACTCCTGTTGCTT
NONE
OsAffx.21694.1.S1_at--672--8811Chr01:33877484..33877508 (25 bp)
TGTTGCTTCTTCCTTTCTCTATCCA
NONE
OsAffx.21694.1.S1_at--1088--851Chr01:33877527..33877551 (25 bp)
ATGGCTGAACTCTTCTCTGCAGCCT
NONE
OsAffx.21694.1.S1_at--33--2431Chr01:33877562..33877586 (25 bp)
AAAAGGTCCACATCCTTCAATCGGC
NONE
OsAffx.21694.1.S1_at--801--851Chr01:33877599..33877623 (25 bp)
ATGGCTTTAATGTTTCTATATCCGG
NONE
OsAffx.21694.1.S1_at--777--6931Chr01:33877626..33877650 (25 bp)
GTAGGGAATCTCGTGCTTGCATATC
NONE
OsAffx.21694.1.S1_at--1132--10051Chr01:33877738..33877762 (25 bp)
TAGGAGTTGTGATCGGGTTTCTTTC
NONE
OsAffx.21694.1.S1_at--270--7953Chr03:17033461..17033485 (25 bp)
GGATATTCTTATTCACTGCTCAGAG
LOC_Os03g29960
Target Sequence 
CACCTTACCTTAATCCATTTTCTTGAGGATCTTGCATTTGTTCGTTCTCTGCCGACCTATTGTTTCCATCACTCCTGTTG
CTTCTTCCTTTCTCTATCCAACCCGAGCTCTATCGCCCATGGCTGAACTCTTCTCTGCAGCCTCATCGCCAACAAAAGGT
CCACATCCTTCAATCGGCATGTACTATGGAATGGCTTTAATGTTTCTATATCCGGAAGTAGGGAATCTCGTGCTTGCATA
TCTAAATCTAAGTTTTGAGACAGACCNTTCATGGGTTCAAAGAAAAGAAGAGTACGAGTGGGTGATGTGATTGACTAATA
GGAAAGTGATAGGAGTTGTGATCGGGTTTCTTTCTTTTTTTGCCAAGGATATTCTTATTCACTGCTCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis