Browse Element(s) Details


Os.56891.1.S1_at

Description gb:AK110543.1
DB_XREF= gi:32995752
TID=Os.56891.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-B05, full insert sequence.
FL= gb:AK110543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2993011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29880Os.14919.1.S1_at4/113+16979721..16984701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29900OsAffx.29313.1.S1_at1/113+16986909..16990220transposon protein, putative, Mutator sub-class
LOC_Os03g29910Os.9725.1.S1_x_at11/113+16994292..16998909expressed protein
LOC_Os03g29920OsAffx.25289.1.S1_x_at11/113+17001913..17004167heavy metal-associated domain containing protein, expressed
LOC_Os03g29930Os.56891.1.S1_at11/113+17008119..17009227expressed protein
LOC_Os03g29940OsAffx.31892.2.S1_x_at1/113+17015002..17021628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29950Os.20940.1.S1_at11/113+17022722..17027180Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g29960OsAffx.25290.1.S1_at11/113+17032788..17039265expressed protein
LOC_Os03g29960OsAffx.21694.1.S1_at1/113+17032788..17039265expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56891.1.S1_at--1129--1851Chr03:17008563..17008587 (25 bp)
ACGACGATCATGTTTCCGCGGGAGC
LOC_Os03g29930
Os.56891.1.S1_at--799--711Chr03:17008554..17008578 (25 bp)
ATGTTTCCGCGGGAGCGATCGTCGT
LOC_Os03g29930
Os.56891.1.S1_at--966--6291Chr03:17008522..17008546 (25 bp)
GATGATGCCAACAAGATCAGCTCCC
LOC_Os03g29930
Os.56891.1.S1_at--871--4611Chr03:17008464..17008488 (25 bp)
GCGAGGACACAAACGGACGAGCCGA
LOC_Os03g29930
Os.56891.1.S1_at--626--2771Chr03:17008434..17008458 (25 bp)
AAGAGGAAGCCTTCGACCAGTGCGG
LOC_Os03g29930
Os.56891.1.S1_at--841--8031Chr03:17008361..17008385 (25 bp)
GGAGTTCATCGCCAACACAAAGAGG
LOC_Os03g29930
Os.56891.1.S1_at--495--6331Chr03:17008334..17008358 (25 bp)
GATGCAGATGGAGAGCCTCCAGCTA
LOC_Os03g29930
Os.56891.1.S1_at--479--4471Chr03:17008320..17008344 (25 bp)
GCCTCCAGCTACAGCTAGTCATGAT
LOC_Os03g29930
Os.56891.1.S1_at--1152--2531Chr03:17008211..17008235 (25 bp)
AACTAATAGTGCTTGTACTTGTACA
LOC_Os03g29930
Os.56891.1.S1_at--777--7011Chr03:17008197..17008221 (25 bp)
GTACTTGTACAGTACTACCGGCTGC
LOC_Os03g29930
Os.56891.1.S1_at--371--1771Chr03:17008181..17008205 (25 bp)
ACCGGCTGCATGATCACTGTACAAA
LOC_Os03g29930
Target Sequence 
ACGACGATCATGTTTCCGCGGGAGCGATCGTCGTGGTGGATGATGATGCCAACAAGATCAGCTCCCCTGTCCCCGACTCC
GATCACCATCGCTACTCCGGCGAGGACACAAACGGACGAGCCGACGACGAAGAGGAAGCCTTCGACCAGTGCGGCGGCGG
CGACGACGACGACGATGTGGACGACATGAACAGGAGGTTCGAGGAGTTCATCGCCAACACAAAGAGGAAGATGCAGATGG
AGAGCCTCCAGCTACAGCTAGTCATGATGAAGGTTTAGAACAATAAATAAAAAAAACTTTTTTTCTTTTTTCCCTCTCTT
TCCAGGGAGAAAAAAAAAAGAATTGTAGGAGAAACTAATAGTGCTTGTACTTGTACAGTACTACCGGCTGCATGATCACT
GTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis