Browse Element(s) Details


Os.9725.1.S1_x_at

Description gb:AK061834.1
DB_XREF= gi:32971852
TID=Os.9725.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D05, full insert sequence.
FL= gb:AK061834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2991011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29864OsAffx.25288.1.S1_s_at11/113+16969392..16977744retrotransposon protein, putative, unclassified, expressed
LOC_Os03g29880Os.14919.1.S1_at4/113+16979721..16984701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29900OsAffx.29313.1.S1_at1/113+16986909..16990220transposon protein, putative, Mutator sub-class
LOC_Os03g29910Os.9725.1.S1_x_at11/113+16994292..16998909expressed protein
LOC_Os03g29920OsAffx.25289.1.S1_x_at11/113+17001913..17004167heavy metal-associated domain containing protein, expressed
LOC_Os03g29930Os.56891.1.S1_at11/113+17008119..17009227expressed protein
LOC_Os03g29940OsAffx.31892.2.S1_x_at1/113+17015002..17021628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29950Os.20940.1.S1_at11/113+17022722..17027180Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9725.1.S1_x_at--1099--1251Chr03:16998336..16998360 (25 bp)
AGATATATCTTGGACCGCACGGCGC
LOC_Os03g29910
Os.9725.1.S1_x_at--243--7251Chr03:16998452..16998476 (25 bp)
GTGCTTGGAACTGGCCGGGACAACA
LOC_Os03g29910
Os.9725.1.S1_x_at--595--3011Chr03:16998506..16998530 (25 bp)
AATGCTGGCCACCATGTCAAGGAAC
LOC_Os03g29910
Os.9725.1.S1_x_at--290--6211Chr03:16998567..16998591 (25 bp)
GAGGCTTGCTCCCTGTGAAACTTTT
LOC_Os03g29910
Os.9725.1.S1_x_at--1076--5531Chr03:16998583..16998607 (25 bp)
GAAACTTTTCTCTCTCCTATATCAA
LOC_Os03g29910
Os.9725.1.S1_x_at--382--10091Chr03:16998669..16998693 (25 bp)
TAGGACAACCTATCTTGCAGCGGCA
LOC_Os03g29910
Os.9725.1.S1_x_at--570--8971Chr03:16998702..16998726 (25 bp)
TGAACTGTGGCCATGTACGTACCGT
LOC_Os03g29910
Os.9725.1.S1_x_at--488--3111Chr03:16998783..16998807 (25 bp)
AATATGTGTTGTTCCGGATGTCGCC
LOC_Os03g29910
Os.9725.1.S1_x_at--921--7231Chr03:16998802..16998826 (25 bp)
GTCGCCGACACTACAGGTATCTGGA
LOC_Os03g29910
Os.9725.1.S1_x_at--762--1291Chr03:16998839..16998863 (25 bp)
AGATCCATGTCTATTCCGTTTGTCA
LOC_Os03g29910
Os.9725.1.S1_x_at--1113--8691Chr03:16998877..16998901 (25 bp)
TGTGCCTAATACATCATCGTCGTCA
LOC_Os03g29910
Target Sequence 
AGATATATCTTGGACCGCACGGCGCACCGCCNTCTCGAGCAAAGAAGCAAGAGGACACTGCAGCAGCTGCCACTGGGTAC
CGCGACAAGAGCAAGGTGAAGGAAGCTGATCAAAAGGTGCTTGGAACTGGCCGGGACAACAAAGGGGGCNATAACTTCAA
CCGCTACAACAATGCTGGCCACCATGTCAAGGAACCCTACNAGAGATCCACTTGACCTTCTCCTCTCCACTGAGGCTTGC
TCCCTGTGAAACTTTTCTCTCTCCTATATCAACACAGCTTGACGAAGCCAAATTTACGCGATTTGTCGGTGTGATGGATA
TCATTGCTGGAATTAGGACAACCTATCTTGCAGCGGCATGTATACCTGAACTGTGGCCATGTACGTACCGTCTGTTTGCT
ACTCTGGGCTGGAGCAATGCGTTTGCTGATTTTCTTTCGAATGGAAAAATATGTGTTGTTCCGGATGTCGCCGACACTAC
AGGTATCTGGAGCATTACAAAGCAGATCCATGTCTATTCCGTTTGTCATTGCCATGATTAATGTGCCTAATACATCATCG
TCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9725.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis