Browse Element(s) Details


OsAffx.25289.1.S1_x_at

Description tigr:9631.m02921
TID=OsAffx.25289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2992011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29864OsAffx.25288.1.S1_s_at11/113+16969392..16977744retrotransposon protein, putative, unclassified, expressed
LOC_Os03g29880Os.14919.1.S1_at4/113+16979721..16984701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29900OsAffx.29313.1.S1_at1/113+16986909..16990220transposon protein, putative, Mutator sub-class
LOC_Os03g29910Os.9725.1.S1_x_at11/113+16994292..16998909expressed protein
LOC_Os03g29920OsAffx.25289.1.S1_x_at11/113+17001913..17004167heavy metal-associated domain containing protein, expressed
LOC_Os03g29930Os.56891.1.S1_at11/113+17008119..17009227expressed protein
LOC_Os03g29940OsAffx.31892.2.S1_x_at1/113+17015002..17021628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29950Os.20940.1.S1_at11/113+17022722..17027180Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25289.1.S1_x_at--1083--4171Chr03:17003664..17003688 (25 bp)
CCCATGCCGATGACGGTGCAGGCGA
LOC_Os03g29920
OsAffx.25289.1.S1_x_at--965--1651Chr03:17003827..17003851 (25 bp)
AGCCGCCGTACTACGACGAGGAGCC
LOC_Os03g29920
OsAffx.25289.1.S1_x_at--301--4271Chr03:17003854..17003878 (25 bp)
CCGGCTGCAGCGTCATGTGACGTGA
LOC_Os03g29920
OsAffx.25289.1.S1_x_at--362--8651Chr03:17003869..17003893 (25 bp)
TGTGACGTGACGAACCAAAACCGAT
LOC_Os03g29920
OsAffx.25289.1.S1_x_at--104--3251Chr03:17003884..17003908 (25 bp)
CAAAACCGATGAGGCCACGAGTCTT
LOC_Os03g29920
OsAffx.25289.1.S1_x_at--1162--871Chr03:17003895..17003919 (25 bp)
AGGCCACGAGTCTTCTTGTGTGAAA
LOC_Os03g29920
OsAffx.25289.1.S1_x_at--427--791Chr03:17003944..17003968 (25 bp)
ATGTGTATGCATGATCGGTTCGTTT
LOC_Os03g29920
OsAffx.25289.1.S1_x_at--223--3971Chr03:17003959..17003983 (25 bp)
CGGTTCGTTTATATCATCATGTGTA
LOC_Os03g29920
OsAffx.25289.1.S1_x_at--418--631Chr03:17003999..17004023 (25 bp)
ATGCTAGCTGAGTACCATGTGTGTA
LOC_Os03g29920
OsAffx.25289.1.S1_x_at--479--1191Chr03:17004079..17004103 (25 bp)
AGTATGCAATCAGGGTTTCTTTTAA
LOC_Os03g29920
OsAffx.25289.1.S1_x_at--1069--4731Chr03:17004110..17004134 (25 bp)
GCTGTATCAGATTTTGACTTTGTAC
LOC_Os03g29920
Target Sequence 
CCCATGCCGATGACGGTGCAGGCGACGGCCACGCCGTCCATCTGGCCGGCACCGGCGCCATCGGCGCCGGCGCCGCTGGA
GTGGGGGCACAGCGCCCCGACGTACGGGGCGGGGTGGGCCCCGCCGCCGGCAGGCGGCTACTACGGCGGCCGGAGCCCGT
ACCAGCCGCCGTACTACGACGAGGAGCCGGCCGGCTGCAGCGTCATGTGACGTGACGAACCAAAACCGATGAGGCCACGA
GTCTTCTTGTGTGAAAAAGGAAAAAAAAGGAAAAAAATTTATGTGTATGCATGATCGGTTCGTTTATATCATCATGTGTA
AATTTGAACAAGAGAATGCTAGCTGAGTACCATGTGTGTAGAGTTACTGTGTAATGTAATGTTTTCAACTTGGTGTATTT
ATGATGATGAAAACAAGTATGCAATCAGGGTTTCTTTTAATTTAAAGCTGTATCAGATTTTGACTTTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25289.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis