Browse Element(s) Details


OsAffx.25290.1.S1_at

Description tigr:9631.m02927
TID=OsAffx.25290.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2996011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29930Os.56891.1.S1_at11/113+17008119..17009227expressed protein
LOC_Os03g29940OsAffx.31892.2.S1_x_at1/113+17015002..17021628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29950Os.20940.1.S1_at11/113+17022722..17027180Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g29960OsAffx.25290.1.S1_at11/113+17032788..17039265expressed protein
LOC_Os03g29960OsAffx.21694.1.S1_at1/113+17032788..17039265expressed protein
LOC_Os03g29970Os.49770.1.S1_s_at11/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29970OsAffx.23994.1.S1_x_at1/113+17039267..17041268CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os03g29980Os.24495.2.S1_x_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29980Os.24495.1.S1_at11/113+17047007..17051204ACT domain containing protein, putative, expressed
LOC_Os03g29990OsAffx.3367.1.S1_at9/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.28338.3.A1_x_at7/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.5300.2.S1_at1/113+17059193..17061202hypothetical protein
LOC_Os03g29990OsAffx.17065.1.A1_s_at1/113+17059193..17061202hypothetical protein
LOC_Os03g30000Os.53812.1.S1_at11/113+17064129..17068701Glycosyl transferase family 8 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25290.1.S1_at--168--2151Chr03:17038406..17038430 (25 bp)
ACAGAAGTGCGGCTGCTGAAAGTTC
LOC_Os03g29960
OsAffx.25290.1.S1_at--1136--10611Chr03:17038428..17038452 (25 bp)
TTCGCAGGATGGACGGTGTGAACAT
LOC_Os03g29960
OsAffx.25290.1.S1_at--814--5131Chr03:17038465..17038489 (25 bp)
GCAAACAATGGTGGTGACTTTATCA
LOC_Os03g29960
OsAffx.25290.1.S1_at--170--3011Chr03:17038498..17038522 (25 bp)
AATGCTGTGCAGGATACTATCAGTG
LOC_Os03g29960
OsAffx.25290.1.S1_at--1142--8591Chr03:17038581..17038605 (25 bp)
TGGTGAAGCCGTAGAAGCCGTAGAT
LOC_Os03g29960
OsAffx.25290.1.S1_at--1023--2311Chr03:17038624..17038648 (25 bp)
AAAGGTGGAGAAAGTGCTGACCCCA
LOC_Os03g29960
OsAffx.25290.1.S1_at--994--8071Chr03:17038702..17038726 (25 bp)
GGAGCTGAAGATTCTCACTGCAACA
LOC_Os03g29960
OsAffx.25290.1.S1_at--208--8991Chr03:17038770..17038794 (25 bp)
TGAAGCTGGCAACACTGAGAACGGT
LOC_Os03g29960
OsAffx.25290.1.S1_at--364--1431Chr03:17038787..17038811 (25 bp)
AGAACGGTGAAAATGTGGTATCCCA
LOC_Os03g29960
OsAffx.25290.1.S1_at--144--7511Chr03:17038801..17038825 (25 bp)
GTGGTATCCCACGATGCTGAAAAGG
LOC_Os03g29960
OsAffx.25290.1.S1_at--553--9691Chr03:17038848..17038872 (25 bp)
TCAAAATGCAAACCCCGAACAGACC
LOC_Os03g29960
Target Sequence 
ACAGAAGTGCGGCTGCTGAAAGTTCGCAGGATGGACGGTGTGAACATGACAGAGAGAATGCAAACAATGGTGGTGACTTT
ATCAGGGATGATAATGCTGTGCAGGATACTATCAGTGGTGATCATGTGGAATATTCCAGAGATGGTGAAGCTGAAAGGGC
AAAGATGAACAGTAATGGTGAAGCCGTAGAAGCCGTAGATGGCGGAACTGAAGCATCAAAAGGTGGAGAAAGTGCTGACC
CCAAAGATGATAACAACCGAAATGGCGATAAAAGTGCACTAGATATTGATGATCGTGGAGCTGAAGATTCTCACTGCAAC
AAAAACGGTGAAAATGTAGCTTGTGTGGAAAATGGCAAAACTAATGAAGCTGGCAACACTGAGAACGGTGAAAATGTGGT
ATCCCACGATGCTGAAAAGGATGATAAAAGAAAGGATCCCATTCAAAATGCAAACCCCGAACAGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis