Browse Element(s) Details


Os.53898.1.S1_at

Description gb:AK100692.1
DB_XREF= gi:32985901
TID=Os.53898.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114G05, full insert sequence.
FL= gb:AK100692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1731011/11senescence-associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17280Os.49134.2.S1_x_at8/117+10203325..10207221Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17280Os.49134.2.S1_at6/117+10203325..10207221Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17290Os.34131.1.S1_s_at9/117+10209817..10211952hAT family dimerisation domain containing protein
LOC_Os07g17300OsAffx.28489.1.S1_at11/117+10216583..10219038hypothetical protein
LOC_Os07g17310Os.53898.1.S1_at11/117+10221827..10224447senescence-associated protein, putative, expressed
LOC_Os07g17320OsAffx.16308.1.S1_at11/117+10228390..10229262hypothetical protein
LOC_Os07g17320Os.55138.1.S1_x_at3/117+10228390..10229262hypothetical protein
LOC_Os07g17330Os.11195.1.S1_at11/117+10230137..10230977senescence-associated protein, putative, expressed
LOC_Os07g17340Os.47463.1.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17340Os.14491.2.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17350NANA7+10241353..10243527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17360Os.11000.2.S1_x_at11/117+10246058..10250747transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010150biological_processleaf senescence
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53898.1.S1_at--1048--1471Chr07:10221867..10221891 (25 bp)
AGCAATGGCTTCTCGATGGATCCGT
LOC_Os07g17310
Os.53898.1.S1_at--536--6231Chr07:10221881..10222288 (25 bp)
GATGGATCCGTCCTGAGGTGTACCC
LOC_Os07g17310
Os.53898.1.S1_at--427--6331Chr07:10222328..10222352 (25 bp)
GATGCAGCTGGTGCGAAACATCACC
LOC_Os07g17310
Os.53898.1.S1_at--325--2791Chr07:10224075..10224099 (25 bp)
AAGAGGTACTCCCAGCATGGCGTGA
LOC_Os07g17310
Os.53898.1.S1_at--124--4671Chr07:10224094..10224118 (25 bp)
GCGTGAGGAGGTTCTGGCTCTCCAA
LOC_Os07g17310
Os.53898.1.S1_at--86--4611Chr07:10224124..10224148 (25 bp)
GCGACTACATGCAGGCCCTGGACAA
LOC_Os07g17310
Os.53898.1.S1_at--475--2831Chr07:10224183..10224207 (25 bp)
AAGTCATACTTATTCGATGGGTACA
LOC_Os07g17310
Os.53898.1.S1_at--742--251Chr07:10224219..10224243 (25 bp)
ATATCGATTTGATTCTCGGCTTCAA
LOC_Os07g17310
Os.53898.1.S1_at--199--4331Chr07:10224298..10224322 (25 bp)
CCATGTTAGGACTTGCTACTTTACA
LOC_Os07g17310
Os.53898.1.S1_at--924--10151Chr07:10224335..10224359 (25 bp)
TATCTGTCTGTTTCTCTAGGAATGA
LOC_Os07g17310
Os.53898.1.S1_at--861--6411Chr07:10224358..10224382 (25 bp)
GATCATTTCCACTGTAATTCCTTTT
LOC_Os07g17310
Target Sequence 
AGCAATGGCTTCTCGATGGATCCGTCCTGAGGTGTACCCGCTGTTCGCGACCACCGGCGTGGCCGTGGGGATCTGCGCGA
TGCAGCTGGTGCGAAACATCACCACCAACCCGGAAGTGAGGGTGACGAAGGAGAACAGGGCGGCTGGCGTGCTGGAGAAC
TTCGACGAGGGGAAGAGGTACTCCCAGCATGGCGTGAGGAGGTTCTGGCTCTCCAAGCGCCGCGACTACATGCAGGCCCT
GGACAACCCCACCAACCCCTCAACCAAAAAAATAGACGCAAAAGTCATACTTATTCGATGGGTACATATATATATATATA
TCGATTTGATTCTCGGCTTCAAAATGCCTATATATAAATGAATGAATCGACAATAAGTTTTCAACATGGGGAATATCCAT
GTTAGGACTTGCTACTTTACATATTTGTCCATATATCTGTCTGTTTCTCTAGGAATGATCATTTCCACTGTAATTCCTTT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis