Browse Element(s) Details


Os.53923.1.S1_at

Description gb:AK100859.1
DB_XREF= gi:32986068
TID=Os.53923.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123M11, full insert sequence.
FL= gb:AK100859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4704011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47000Os.28370.1.A1_s_at11/116+28503187..28507810EF hand family protein, expressed
LOC_Os06g47000Os.49375.1.S1_at11/116+28503187..28507810EF hand family protein, expressed
LOC_Os06g47010NANA6+28512372..28512962retrotransposon protein, putative, unclassified
LOC_Os06g47020OsAffx.15960.1.S1_at11/116+28513438..28514082ZmEBE-2 protein, putative
LOC_Os06g47030OsAffx.15961.1.S1_at11/116+28522996..28523217hypothetical protein
LOC_Os06g47040Os.53923.1.S1_at11/116+28523561..28524827expressed protein
LOC_Os06g47050OsAffx.28143.1.S1_at10/116+28525553..28528215hypothetical protein
LOC_Os06g47060OsAffx.15962.1.S1_at11/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_at2/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_x_at1/116+28530612..28532532hypothetical protein
LOC_Os06g47070OsAffx.30013.1.S1_x_at2/116+28537704..28538273hypothetical protein
LOC_Os06g47080OsAffx.828.1.S1_x_at1/116+28539405..28540139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47090OsAffx.30013.5.S1_x_at11/116+28541584..28542121hypothetical protein
LOC_Os06g47090Os.56292.1.S1_x_at3/116+28541584..28542121hypothetical protein
LOC_Os06g47090Os.56292.1.S1_at1/116+28541584..28542121hypothetical protein
LOC_Os06g47090OsAffx.30013.1.S1_x_at1/116+28541584..28542121hypothetical protein
LOC_Os06g47100OsAffx.15963.1.S1_at11/116+28546658..28548833F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53923.1.S1_at--309--1571Chr06:28524242..28524266 (25 bp)
AGCTACTTCTCGCTGAGGAGCAGTG
LOC_Os06g47040
Os.53923.1.S1_at--354--1511Chr06:28524388..28524412 (25 bp)
AGCACGAGCTCAGGGCTGGATCGAC
LOC_Os06g47040
Os.53923.1.S1_at--887--751Chr06:28524426..28524450 (25 bp)
ATGTGCTCCACTTGATAGGATCCCG
LOC_Os06g47040
Os.53923.1.S1_at--952--8831Chr06:28524438..28524462 (25 bp)
TGATAGGATCCCGTCGAATGCGCTC
LOC_Os06g47040
Os.53923.1.S1_at--59--4051Chr06:28524467..28524491 (25 bp)
CGATTGCCTGGCTTGTCAAACTAAG
LOC_Os06g47040
Os.53923.1.S1_at--921--2671Chr06:28524489..28524513 (25 bp)
AAGCTAGTTCAACAGGTCCCTATTT
LOC_Os06g47040
Os.53923.1.S1_at--611--7471Chr06:28524603..28524627 (25 bp)
GTGTGTTTGGGTCTACATGCATGTA
LOC_Os06g47040
Os.53923.1.S1_at--1--10031Chr06:28524629..28524653 (25 bp)
TAGAGTACGCGGACATCTGATGTTT
LOC_Os06g47040
Os.53923.1.S1_at--1126--2311Chr06:28524658..28524682 (25 bp)
AAAGATGTCCCTCCTTTTTGTGGCT
LOC_Os06g47040
Os.53923.1.S1_at--393--8171Chr06:28524701..28524725 (25 bp)
GGAACAAATAAGATGTCCCTCCTTT
LOC_Os06g47040
Os.53923.1.S1_at--644--7791Chr06:28524764..28524788 (25 bp)
GGTCCAGTGTAGTGCCTCTTTAAAA
LOC_Os06g47040
Target Sequence 
AGCTACTTCTCGCTGAGGAGCAGTGGGAGGCTAGCAGGCGTCAACGCGGCAGCAAGCAGCACACAGGCAGTGGGGTGCGC
CATGACAATGGCAAGAAAGGCGACGACCATGGTGGAGACTGCGAGGATGACGATGACGACGGCAGCAGCACGAGCTCAGG
GCTGGATCGACAGGATCCCGTCGAATGTGCTCCACTTGATAGGATCCCGTCGAATGCGCTCCATTCGATTGCCTGGCTTG
TCAAACTAAGCTAGTTCAACAGGTCCCTATTTTTGCAAATAAATCCGGATACCAACTTTTGTTTTTGTGACTTTTTATTA
AAATAATAATATTTCTAAGAAAATGCCAGCGCACACCACGAGTGTGTTTGGGTCTACATGCATGTAGTAGAGTACGCGGA
CATCTGATGTTTGATAAAAGATGTCCCTCCTTTTTGTGGCTTTCTCTGTTTTTTTCACTGGAACAAATAAGATGTCCCTC
CTTTTTTTAATCACTTTCAACTACGTGGTACGACACATTGAAGGTCCAGTGTAGTGCCTCTTTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis