Browse Element(s) Details


Os.53924.1.S1_at

Description gb:AK100860.1
DB_XREF= gi:32986069
TID=Os.53924.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53924 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123N13, full insert sequence.
FL= gb:AK100860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3776011/11lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37740Os.17886.1.S1_at9/117+22626002..22630563Secretory carrier-associated membrane protein, putative, expressed
LOC_Os07g37750Os.38103.1.S1_at11/117+22633066..22643973guanine nucleotide exchange family protein, putative, expressed
LOC_Os07g37760Os.53924.1.S1_at11/117+22646672..22652656lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os07g37770Os.12042.1.S1_at8/117+22652964..2265489440S ribosomal protein S11, putative, expressed
LOC_Os07g37780Os.12042.1.S1_at9/117+22655551..2265748040S ribosomal protein S11, putative, expressed
LOC_Os07g37790Os.31773.2.S1_at10/117+22657868..22661984Cell differentiation protein rcd1, putative, expressed
LOC_Os07g37790Os.31773.2.S1_x_at10/117+22657868..22661984Cell differentiation protein rcd1, putative, expressed
LOC_Os07g37800Os.37917.1.S1_at10/117+22664414..22668455Bromodomain containing protein, expressed
LOC_Os07g37810Os.44473.1.S1_at8/117+22670152..22675055Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53924.1.S1_at--647--9371Chr07:22649595..22649619 (25 bp)
TCGAGATCTGCTTGGCGATGTGCTT
LOC_Os07g37760
Os.53924.1.S1_at--381--6271Chr07:22649581..22649603 (23 bp)
GATGTGCTTGGCATCTTATCCAGAA
LOC_Os07g37760
Os.53924.1.S1_at--864--3411Chr07:22648785..22648809 (25 bp)
CAGAATGATCTTATCCACGGATGGG
LOC_Os07g37760
Os.53924.1.S1_at--1036--7831Chr07:22647912..22647936 (25 bp)
GGTACAGACATTGGGAGGTCCTTCA
LOC_Os07g37760
Os.53924.1.S1_at--785--7791Chr07:22647463..22647920 (25 bp)
GGTCCTTCAGTAAAGCGATCCCATG
LOC_Os07g37760
Os.53924.1.S1_at--960--2971Chr07:22647430..22647454 (25 bp)
AATGATCCACTTCACCAGAAAACTG
LOC_Os07g37760
Os.53924.1.S1_at--667--2931Chr07:22647285..22647309 (25 bp)
AAGGCAGGCCTTGATATGCGGACAA
LOC_Os07g37760
Os.53924.1.S1_at--985--10131Chr07:22646961..22646985 (25 bp)
TTCACGATCGGAGCTTCGGGATTTC
LOC_Os07g37760
Os.53924.1.S1_at--992--2131Chr07:22646905..22646929 (25 bp)
ACAGAGCATGGGTCGATCCGTTTGC
LOC_Os07g37760
Os.53924.1.S1_at--498--10271Chr07:22646800..22646824 (25 bp)
TTTGCAACACCAGTTTTGGAGCGTA
LOC_Os07g37760
Os.53924.1.S1_at--595--10031Chr07:22646777..22646801 (25 bp)
TAGAGTTTTCGGTCGCCACATTATG
LOC_Os07g37760
Target Sequence 
TCGAGATCTGCTTGGCGATGTGCTTGGCATCTTATCCAGAATGATCTTATCCACGGATGGGGCATTGATTACAAATTTGG
GTACTGTGCTCAGGGTGACAGAACAAAGAACATTGGAGTAGTTGATAGTGAATACATAGTTCATCGAGGGGTACAGACAT
TGGGAGGTCCTTCAGTAAAGCGATCCCATGGCAAAAACAATGATCCACTTCACCAGAAAACTGCAGAAGCGCAACAACAG
ATGAGAGTGAAGGCAGGCCTTGATATGCGGACAAAGGTCAGGAGATATTCACGATCGGAGCTTCGGGATTTCCAGAAGCG
TTGGGAGCGGGCCACCAGGGAAGACAGAGCATGGGTCGATCCGTTTGCTCGCCCACGAAGAAAAAGGAAGAGAACTGATA
GACAATAGGTTAGCGAGTGTTTCGATCATGATTTGTATTTTTTTTTCTTTTGCAACACCAGTTTTGGAGCGTAGAGTTTT
CGGTCGCCACATTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis